Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra002028.1-P | |
| Bra009657.1-P | |
| Bra037281.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G23820.1 | Bra002028.1-P | AT2G17200.1 | 21798944 |
| AT5G23820.1 | Bra009657.1-P | AT2G17200.1 | 21798944 |
| AT5G23820.1 | Bra037281.1-P | AT2G17200.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04522 | Canola | extracellular | 100.0 | 100.0 |
| Bra028884.1-P | Field mustard | extracellular | 44.85 | 48.37 |
| AT5G23820.1 | Thale cress | extracellular | 43.03 | 43.29 |
| AT5G23840.1 | Thale cress | extracellular | 42.42 | 41.92 |
| Bra020976.1-P | Field mustard | extracellular | 39.39 | 41.4 |
| AT5G23830.1 | Thale cress | extracellular | 38.79 | 39.02 |
Protein Annotations
Description
AT5G23820 (E=2e-017) | MD-2-related lipid recognition domain-containing protein / ML domain-containing protein
Coordinates
chrA07:-:10744007..10745145
Molecular Weight (calculated)
17956.4 Da
IEP (calculated)
3.837
GRAVY (calculated)
0.344
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MEILNARPVL LLLLASLFFL PALGAIDFEY CNKSGYDFFN VSRVEVSPNP VELEEYPTIR VFGYANKSMD DGTVEVKVTA GGTTQTMASY SLCVVGFECA
101: IAAGTNFELV LAEVPLEYIE GVSKYVYSVH LTDDDVGESE EPILRMCVAF EIPTVDLALA SAQSS
101: IAAGTNFELV LAEVPLEYIE GVSKYVYSVH LTDDDVGESE EPILRMCVAF EIPTVDLALA SAQSS
001: MAMSHVQPML LLLVSLFFLP ALRGAIDFEY CAKNGNDYGT VTSIVVSPSV GPHENPTITI NLFGSASKNI PAGTLVYVAF RDGEFTGLLK TYNLCDVSAC
101: NNEAEIEAGT NFELTLSDVL YVGYDEEIKY SVSLRRKTLE EEDPIIKMCV DFKVPAPAPA FVSI
101: NNEAEIEAGT NFELTLSDVL YVGYDEEIKY SVSLRRKTLE EEDPIIKMCV DFKVPAPAPA FVSI
Arabidopsis Description
ML3MD-2-related lipid-recognition protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FF98]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.