Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76495 | Canola | extracellular | 97.45 | 86.93 |
| Bra028884.1-P | Field mustard | extracellular | 48.41 | 49.67 |
| Bra011987.1-P | Field mustard | extracellular | 41.4 | 39.39 |
| AT2G26370.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 35.03 | 31.79 |
Protein Annotations
Description
AT5G23840 (E=4e-014) | MD-2-related lipid recognition domain-containing protein / ML domain-containing protein
Coordinates
chrA08:+:10820079..10821364
Molecular Weight (calculated)
17358.8 Da
IEP (calculated)
4.269
GRAVY (calculated)
0.082
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSYVRLLL LVLAPLLFLP ALYAVDFGYC NKNGYDYGNF SRVEISPNPV GPEDNYLNIT VSGYASKQLN NVTIEVYAKS KKTTDLLGGY SICKVGNACV
101: IRSGLCFSPE CPIEAGTKFV LPIPKVQVDD LEDDFKYVVS LLEDDLVNSS DYDEKFI
101: IRSGLCFSPE CPIEAGTKFV LPIPKVQVDD LEDDFKYVVS LLEDDLVNSS DYDEKFI
001: MAMSHIQPVL FFLASLFFLP ALCSAIDFEY CTKNGHDYGS ISQIWVSPSD GPQENPTITI HLFGSASKDI SAGTLVYVTY RSGDFTGLLK TYDLCDVSAC
101: NPEYVIEAGT DFELTLSDVL YVGFDEEIKY SVSLREKTSE EKNPIIKMCV DFKVPHPAFP PPALVSM
101: NPEYVIEAGT DFELTLSDVL YVGFDEEIKY SVSLREKTSE EKNPIIKMCV DFKVPHPAFP PPALVSM
Arabidopsis Description
MD-2-related lipid recognition domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9FF96]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.