Factsheet for Bra002028.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003533.1-P
Bra010735.1-P
Bra027190.1-P
Bra033573.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17190.1	Bra003533.1-P	AT1G79810.1	23336935
AT2G17200.1	Bra003533.1-P	AT1G79810.1	23336935
AT2G17200.1	Bra027190.1-P	AT3G16120.1	21798944
AT2G17200.1	Bra010735.1-P	AT4G38630.1	20059542
AT2G17200.1	Bra033573.1-P	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31374	Canola	cytosol, plastid	95.45	97.95
Bra009657.1-P	Field mustard	cytosol	86.18	85.87
AT2G17200.1	Thale cress	cytosol	83.27	83.12
AT2G17190.1	Thale cress	cytosol	79.82	81.6
Bra037281.1-P	Field mustard	cytosol	79.82	81.0
Bra011602.1-P	Field mustard	cytosol	58.0	69.8
VIT_03s0038g03680.t01	Wine grape	cytosol	63.27	60.0
TraesCS4B01G325900.2	Wheat	cytosol	55.27	57.14
GSMUA_Achr5P11110_001	Banana	cytosol	55.27	57.04
EER92919	Sorghum	cytosol	55.27	56.51
HORVU4Hr1G082050.15	Barley	cytosol	54.73	56.37
Zm00001d027514_P002	Maize	cytosol	54.91	56.34
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	46.18	55.82
Zm00001d048343_P001	Maize	cytosol	53.82	55.53
TraesCS1D01G206500.1	Wheat	cytosol	56.73	55.32
TraesCS1B01G217000.1	Wheat	cytosol	56.91	55.11
TraesCS1A01G203000.1	Wheat	cytosol	56.73	54.93
Os03t0131300-01	Rice	plasma membrane	52.91	54.49
Os10t0542200-01	Rice	plasma membrane, plastid	56.73	54.26
GSMUA_Achr3P00530_001	Banana	cytosol	54.0	53.71
GSMUA_Achr1P14990_001	Banana	cytosol	53.82	53.43
TraesCS4D01G322800.1	Wheat	cytosol	55.09	53.35
TraesCS5A01G498100.1	Wheat	cytosol	55.09	53.35
EER92003	Sorghum	cytosol	55.64	52.76
HORVU1Hr1G052260.2	Barley	cytosol	54.18	52.19
Zm00001d047373_P001	Maize	cytosol	54.0	51.56
GSMUA_Achr7P04060_001	Banana	cytosol	50.91	51.38
Zm00001d029782_P004	Maize	cytosol	54.55	50.59
GSMUA_Achr1P02760_001	Banana	cytosol	8.36	35.66

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.6	Gene3D:3.10.20.90	EnsemblPlantsGene:Bra002028	EnsemblPlants:Bra002028.1	EnsemblPlants:Bra002028.1-P
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626	InterPro:IPR015940	UniProt:M4CCU7
PFAM:PF00240	PFAM:PF00627	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10677	PANTHER:PTHR10677:SF38
SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd
InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI00025440EF	InterPro:Ubiquilin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
SEG:seg	:	:	:	:	:

Description

AT2G17200 (E=1e-203) | ubiquitin family protein

Coordinates

chrA10:+:12072296..12075158

Molecular Weight (calculated)

58093.7 Da

IEP (calculated)

4.725

GRAVY (calculated)

-0.459

Length

550 amino acids

Sequence
(BLAST)

001: MGGEADSSQP LTAATVSVNV RCSNGSKFSV RTSLDSTVGA FKELVAQHSE VPANQQRLIY KGRILKDDQS LLSYGLEADH TVHMVRGSAP SSSPPPSAPV
101: NQPTPPSVTR GVGSNAGEAL FPGLGFNPLG GGNAMSGLFG AGLPDLDQAQ QQLAQNPNMI RDMMNTPAIQ NLMNNPEFMR SMIMSNPQMR DLVDRNPELG
201: HVLNDPSILR QTMEAARNPE LMREMMRNTD RAMSNIESMP EGFNHLRRMY ENVQEPLMNA TTMSGNAGNN AASNPFAALL GNQGVTTQGS DASNNSTTPS
301: AETGTGNGIP NANPLPNPWG ATAGQTNAPG RTNSGGDTRS PGLGGLGGFG GLGGLGGLGG LGMLGADSPL GATPDASQLS QILQNPAMSQ MMQSLLSNPQ
401: YMNQLMNLNP QLRTMLDSNP QLREMMQNPD FLRQFSSPEM MQQMMTLQQS LFPQNRNTTS QEPGQTGAAA AGTGNNAGLD LLMNMFGSLG AGGLSGTNQS
501: NVPPEERFAT QLQQLQEMGF YDRAENIRAL LATNGNVNAA VERLLGSIGQ

Best Arabidopsis Sequence Match ( AT2G17200.1 )
(BLAST)

001: MGGEGDSSQP QSGEGEAVAV NIRCSNGTKF SVKTSLDSTV ESFKELVAQS SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTIHMVRGS APSSAPPPAP
101: AASQTTAPSV TRGVGSDNSS NLGGASPGES LFPGLGFNPL GGGNAMSGLF GAGLPDLVQT QQQLAQNPNM IRDMMNTPAI QNLMNNPEFM RSMIMNNPQM
201: RELVDRNPEL GHVLNDPSIL RQTLEAARNP ELMREMMRNT DRAMSNIESM PEGFNMLRRM YENVQEPLMN ATTMSGNAGN NTGSNPFAAL LGNQGVTTQG
301: SDASNNSSTP NAGTGTIPNA NPLPNPWGAT GGQTTAPGRT NVGGDARSPG LGGLGGLGSL GGLGGLGMLG ADSPLGATPD ASQLSQLLQN PAISQMMQSV
401: FSNPQYMNQL MSLNPQLRSM LDSNPQLREM MQNPDFLRQF SSPEMMQQMM TLQQSLSQNR NTASQDAGQT GAATGNNGGL DLLMNMFGSL GAGGLSGTNQ
501: SNVPPEERYA TQLQQLQEMG FYDRAENIRA LLATNGNVNA AVERLLGSIG Q

Arabidopsis Description

DSK2BUbiquitin domain-containing protein DSK2b [Source:UniProtKB/Swiss-Prot;Acc:Q9SII8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.