Factsheet for GSMUA_Achr3P00530_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P11290_001
GSMUA_Achr2P19900_001
GSMUA_Achr4P25580_001
GSMUA_Achr7P14400_001
GSMUA_Achr7P25190_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17190.1	GSMUA_Achr10P...	AT1G79810.1	23336935
AT2G17200.1	GSMUA_Achr10P...	AT1G79810.1	23336935
AT2G17200.1	GSMUA_Achr10P...	AT3G16120.1	21798944
AT2G17200.1	GSMUA_Achr10P...	AT3G16120.1	21798944
AT2G17200.1	GSMUA_Achr2P19900_001	AT3G16120.1	21798944
AT2G17200.1	GSMUA_Achr7P14400_001	AT3G16120.1	21798944
AT2G17200.1	GSMUA_Achr7P25190_001	AT3G16120.1	21798944
AT2G17200.1	GSMUA_Achr11P...	AT4G38630.1	20059542
AT2G17200.1	GSMUA_Achr2P11290_001	AT4G38630.1	20059542
AT2G17200.1	GSMUA_Achr4P25580_001	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P14990_001	Banana	cytosol	82.1	81.95
GSMUA_Achr7P04060_001	Banana	cytosol	74.14	75.23
GSMUA_Achr5P11110_001	Banana	cytosol	58.23	60.41
Solyc02g082800.2.1	Tomato	plastid	60.22	60.22
VIT_03s0038g03680.t01	Wine grape	cytosol	62.93	60.0
PGSC0003DMT400003987	Potato	cytosol	59.86	59.96
Solyc03g032160.2.1	Tomato	plastid	59.86	59.43
KRH28904	Soybean	cytosol	56.78	58.04
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	47.56	57.8
KRH76549	Soybean	cytosol	56.42	57.67
VIT_04s0210g00220.t01	Wine grape	cytosol, nucleus	53.71	57.56
KRH07920	Soybean	cytosol	56.06	57.3
KRH69678	Soybean	nucleus	56.42	57.25
CDY31374	Canola	cytosol, plastid	53.53	55.22
CDY26796	Canola	cytosol	52.8	55.2
CDX88001	Canola	cytosol	53.89	54.98
CDY07870	Canola	cytosol	53.16	54.65
CDY47488	Canola	cytosol	51.72	54.48
AT2G17200.1	Thale cress	cytosol	54.25	54.45
AT2G17190.1	Thale cress	cytosol	52.8	54.28
CDX71349	Canola	cytosol	53.71	54.2
Bra002028.1-P	Field mustard	cytosol, plastid	53.71	54.0
Bra009657.1-P	Field mustard	cytosol	53.89	53.99
KRH07807	Soybean	cytosol, mitochondrion, nucleus	6.51	53.73
Bra037281.1-P	Field mustard	cytosol	52.62	53.69
CDX75489	Canola	cytosol	49.01	52.52
Bra011602.1-P	Field mustard	cytosol	43.22	52.3
PGSC0003DMT400048093	Potato	extracellular	7.59	51.85
PGSC0003DMT400045106	Potato	cytosol	39.78	47.41
Solyc02g060600.1.1	Tomato	cytosol	22.24	43.77
Solyc02g061720.1.1	Tomato	cytosol	25.86	42.31
Solyc02g061670.1.1	Tomato	cytosol	26.76	42.17
Solyc02g061710.1.1	Tomato	nucleus	18.63	42.04
Solyc02g060580.1.1	Tomato	cytosol	23.15	41.83
Solyc02g061680.1.1	Tomato	cytosol	35.44	40.58
GSMUA_Achr1P02760_001	Banana	cytosol	9.4	40.31
Solyc02g061610.1.1	Tomato	cytosol	35.62	39.56
Solyc02g060590.1.1	Tomato	cytosol	9.22	38.06
Solyc02g061640.1.1	Tomato	cytosol	8.68	35.82
CDX69126	Canola	nucleus	42.68	32.73
Solyc02g060570.1.1	Tomato	cytosol	37.43	29.2

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.6	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr3G00530_001	EnsemblPlants:GSMUA_Achr3P00530_001	EnsemblPlants:GSMUA_Achr3T00530_001	InterPro:IPR000626	InterPro:IPR015940	UniProt:M0SAM1
PFAM:PF00240	PFAM:PF00627	ScanProsite:PS00299	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10677
PANTHER:PTHR10677:SF38	SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF46934	SUPFAM:SSF54236
InterPro:STI1_HS-bd	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0002962898	InterPro:Ubiquilin	InterPro:Ubiquitin-like_domsf
InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	SEG:seg	:	:	:

Description

Putative Ubiquilin-1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G00530_001]

Coordinates

chr3:-:416207..422189

Molecular Weight (calculated)

58980.6 Da

IEP (calculated)

4.643

GRAVY (calculated)

-0.449

Length

553 amino acids

Sequence
(BLAST)

001: MGTDGDSGHA SGSDTVGGAA AVTVHVRSSS GSKFSVQTAL DSTVAALKAA LVEKCNIPVE QQRLIYKGRI LKDEQTLESY GLESDHTIHL VRGSIPPAAS
101: ADVTVASNGA SRVPNNTTGV ESGGSNEGGR FGADFGGSLF PGLGVNRRDG SGSGFLGFGL PDLNQMQQQL AQNPSMMREI MNMPAVQSLI NNPDLLRNMI
201: MNNPQMREII DRNPDFAHVL NDPSTLRQSL EVMRNPELMR ELMRNTDRAM SNIESSPEGF NMLRRMYETV QEPFLNATTG AGNMGNDLER NPFAALLGNL
301: GAMQARDQTP NQSVTDSDAT NETAAPNSNP LPNPWGRTAG GARTTNTRQA PASDGRSPAI AGLGGPGLPE LERMAGGMPD PSFLNQLLQN PAIMQMMQSL
401: LSNPQFMNQV LNQQLGGSLG SNSQLRDMLQ NPELIRQLTS PEMLQQLQSF QQSLLSQVVR QQSSQEQNQN DGGAAGTTNT SGLELLMNMF GGLGPGAGVP
501: NNPDVPPEER YATQLSQLQE MGFLDTPANI RALSATSGNV HAAVDWLLRN IGG

Best Arabidopsis Sequence Match ( AT2G17200.1 )
(BLAST)

001: MGGEGDSSQP QSGEGEAVAV NIRCSNGTKF SVKTSLDSTV ESFKELVAQS SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTIHMVRGS APSSAPPPAP
101: AASQTTAPSV TRGVGSDNSS NLGGASPGES LFPGLGFNPL GGGNAMSGLF GAGLPDLVQT QQQLAQNPNM IRDMMNTPAI QNLMNNPEFM RSMIMNNPQM
201: RELVDRNPEL GHVLNDPSIL RQTLEAARNP ELMREMMRNT DRAMSNIESM PEGFNMLRRM YENVQEPLMN ATTMSGNAGN NTGSNPFAAL LGNQGVTTQG
301: SDASNNSSTP NAGTGTIPNA NPLPNPWGAT GGQTTAPGRT NVGGDARSPG LGGLGGLGSL GGLGGLGMLG ADSPLGATPD ASQLSQLLQN PAISQMMQSV
401: FSNPQYMNQL MSLNPQLRSM LDSNPQLREM MQNPDFLRQF SSPEMMQQMM TLQQSLSQNR NTASQDAGQT GAATGNNGGL DLLMNMFGSL GAGGLSGTNQ
501: SNVPPEERYA TQLQQLQEMG FYDRAENIRA LLATNGNVNA AVERLLGSIG Q

Arabidopsis Description

DSK2BUbiquitin domain-containing protein DSK2b [Source:UniProtKB/Swiss-Prot;Acc:Q9SII8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.