Factsheet for PGSC0003DMT400045106

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g060580.1.1	Tomato	cytosol	47.41	71.9
Solyc02g061720.1.1	Tomato	cytosol	50.0	68.64
Solyc02g061610.1.1	Tomato	cytosol	73.28	68.27
Solyc02g060600.1.1	Tomato	cytosol	40.95	67.62
Solyc02g060590.1.1	Tomato	cytosol	19.4	67.16
Solyc02g061680.1.1	Tomato	cytosol	68.32	65.63
Solyc02g061670.1.1	Tomato	cytosol	48.06	63.53
Solyc02g061640.1.1	Tomato	cytosol	18.32	63.43
Solyc02g061710.1.1	Tomato	nucleus	33.19	62.86
PGSC0003DMT400003987	Potato	cytosol	62.07	52.17
Solyc02g060570.1.1	Tomato	cytosol	71.34	46.69
KRH76549	Soybean	cytosol	51.29	43.99
KRH07920	Soybean	cytosol	50.65	43.44
KRH69678	Soybean	nucleus	50.86	43.3
KRH28904	Soybean	cytosol	50.43	43.25
VIT_04s0210g00220.t01	Wine grape	cytosol, nucleus	46.12	41.47
GSMUA_Achr5P11110_001	Banana	cytosol	46.77	40.71
GSMUA_Achr1P14990_001	Banana	cytosol	48.28	40.43
GSMUA_Achr3P00530_001	Banana	cytosol	47.41	39.78
Os03t0131300-01	Rice	plasma membrane	45.47	39.51
GSMUA_Achr7P04060_001	Banana	cytosol	45.91	39.08
TraesCS4B01G325900.2	Wheat	cytosol	44.61	38.91
EER92919	Sorghum	cytosol	44.18	38.1
Zm00001d048343_P001	Maize	cytosol	43.32	37.71
Zm00001d047373_P001	Maize	cytosol	46.55	37.5
Zm00001d027514_P002	Maize	cytosol	43.32	37.5
TraesCS1D01G206500.1	Wheat	cytosol	45.47	37.41
HORVU1Hr1G052260.2	Barley	cytosol	45.91	37.3
HORVU4Hr1G082050.15	Barley	cytosol	42.89	37.27
TraesCS1B01G217000.1	Wheat	cytosol	45.47	37.15
Os10t0542200-01	Rice	plasma membrane, plastid	45.69	36.87
TraesCS1A01G203000.1	Wheat	cytosol	45.04	36.8
EER92003	Sorghum	cytosol	45.91	36.72
TraesCS4D01G322800.1	Wheat	cytosol	43.97	35.92
TraesCS5A01G498100.1	Wheat	cytosol	43.97	35.92
Zm00001d029782_P004	Maize	cytosol	44.61	34.91
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	33.62	34.29
GSMUA_Achr1P02760_001	Banana	cytosol	8.41	30.23
PGSC0003DMT400048093	Potato	extracellular	3.02	17.28
KRH07807	Soybean	cytosol, mitochondrion, nucleus	1.94	13.43

Protein Annotations

MapMan:19.3.4.6	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626
UniProt:M1BH34	PFAM:PF00240	EnsemblPlantsGene:PGSC0003DMG400017491	PGSC:PGSC0003DMG400017491	EnsemblPlants:PGSC0003DMT400045106	PRINTS:PR00348
PFscan:PS50053	PANTHER:PTHR10677	PANTHER:PTHR10677:SF39	SMART:SM00213	SMART:SM00727	SUPFAM:SSF54236
InterPro:STI1_HS-bd	UniParc:UPI000296630B	InterPro:Ubiquilin	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
SEG:seg	:	:	:	:	:

Description

Plant ubiquilin [Source:PGSC_GENE;Acc:PGSC0003DMG400017491]

Coordinates

chr2:-:19399496..19406825

Molecular Weight (calculated)

50672.7 Da

IEP (calculated)

4.306

GRAVY (calculated)

-0.456

Length

464 amino acids

Sequence
(BLAST)

001: MDGGDATKTV KDDSGNIAGG GETVTINIRC VNESKLSVQV SLNSTVGSFK SILSQSADIP AEQQRVIYNG QILKDDQTLK SYGLEADHTV HLVRGFAAAA
101: SASATNVVNP NANQDAPRVA VPTTRGLFVR AGGAPLFSGL GSRGGLFGAG LPDFEQVQQQ LTQNSNMMRE MMNMPLVQNL MNNPEIICNL IMNNPQMREF
201: MNPNPELAYI FNDPAILEAA RNPELMHEMI NNIDWALSSI ESPPDEFNMH MYENIQEPFL IATTMAGDTR NDSGTNSSVA LWGAQEQGRN QSTNPPATGS
301: DTTANPPAPN SNPLSNSWAA ADIGGAQMNT TPRSNAARNI WEPPLGGLDD LPDLQRMLGG MPDASSENQL MEYPAISQIM QHMNEIMGLD PNSHPRDMMP
401: NPEFIRQLTS SERMQEYLVQ QGLFPHLDRP QSNQEQEPEA VRTVGPEELY AIQLIQFITR HGLL

Best Arabidopsis Sequence Match ( AT2G17200.1 )
(BLAST)

001: MGGEGDSSQP QSGEGEAVAV NIRCSNGTKF SVKTSLDSTV ESFKELVAQS SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTIHMVRGS APSSAPPPAP
101: AASQTTAPSV TRGVGSDNSS NLGGASPGES LFPGLGFNPL GGGNAMSGLF GAGLPDLVQT QQQLAQNPNM IRDMMNTPAI QNLMNNPEFM RSMIMNNPQM
201: RELVDRNPEL GHVLNDPSIL RQTLEAARNP ELMREMMRNT DRAMSNIESM PEGFNMLRRM YENVQEPLMN ATTMSGNAGN NTGSNPFAAL LGNQGVTTQG
301: SDASNNSSTP NAGTGTIPNA NPLPNPWGAT GGQTTAPGRT NVGGDARSPG LGGLGGLGSL GGLGGLGMLG ADSPLGATPD ASQLSQLLQN PAISQMMQSV
401: FSNPQYMNQL MSLNPQLRSM LDSNPQLREM MQNPDFLRQF SSPEMMQQMM TLQQSLSQNR NTASQDAGQT GAATGNNGGL DLLMNMFGSL GAGGLSGTNQ
501: SNVPPEERYA TQLQQLQEMG FYDRAENIRA LLATNGNVNA AVERLLGSIG Q

Arabidopsis Description

DSK2BUbiquitin domain-containing protein DSK2b [Source:UniProtKB/Swiss-Prot;Acc:Q9SII8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.