Factsheet for Solyc02g061610.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g061680.1.1	Tomato	cytosol	81.93	84.47
Solyc02g060580.1.1	Tomato	cytosol	51.2	83.33
Solyc02g060600.1.1	Tomato	cytosol	45.38	80.43
Solyc02g061720.1.1	Tomato	cytosol	53.61	78.99
Solyc02g061670.1.1	Tomato	cytosol	53.01	75.21
Solyc02g061710.1.1	Tomato	nucleus	36.35	73.88
PGSC0003DMT400045106	Potato	cytosol	68.27	73.28
Solyc02g060590.1.1	Tomato	cytosol	19.48	72.39
Solyc02g061640.1.1	Tomato	cytosol	17.87	66.42
Solyc02g060570.1.1	Tomato	cytosol	77.71	54.58
Solyc02g082800.2.1	Tomato	plastid	49.6	44.67
Solyc03g032160.2.1	Tomato	plastid	49.0	43.81
KRH07920	Soybean	cytosol	40.56	37.34
KRH76549	Soybean	cytosol	40.36	37.15
KRH69678	Soybean	nucleus	40.56	37.06
Os03t0131300-01	Rice	plasma membrane	39.16	36.52
GSMUA_Achr1P14990_001	Banana	cytosol	40.56	36.46
KRH28904	Soybean	cytosol	39.56	36.41
VIT_04s0210g00220.t01	Wine grape	cytosol, nucleus	37.35	36.05
GSMUA_Achr5P11110_001	Banana	cytosol	38.35	35.83
GSMUA_Achr3P00530_001	Banana	cytosol	39.56	35.62
EER92919	Sorghum	cytosol	38.15	35.32
Zm00001d027514_P002	Maize	cytosol	37.75	35.07
TraesCS4B01G325900.2	Wheat	cytosol	37.35	34.96
GSMUA_Achr7P04060_001	Banana	cytosol	38.15	34.86
Zm00001d048343_P001	Maize	cytosol	36.75	34.33
HORVU4Hr1G082050.15	Barley	cytosol	35.94	33.52
TraesCS1D01G206500.1	Wheat	cytosol	37.35	32.98
HORVU1Hr1G052260.2	Barley	cytosol	37.75	32.92
TraesCS1B01G217000.1	Wheat	cytosol	37.55	32.92
TraesCS4D01G322800.1	Wheat	cytosol	37.35	32.75
Os10t0542200-01	Rice	plasma membrane, plastid	37.75	32.7
TraesCS1A01G203000.1	Wheat	cytosol	37.15	32.57
TraesCS5A01G498100.1	Wheat	cytosol	37.15	32.57
Zm00001d047373_P001	Maize	cytosol	37.55	32.47
EER92003	Sorghum	cytosol	37.35	32.07
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	28.71	31.43
Zm00001d029782_P004	Maize	cytosol	35.94	30.19
GSMUA_Achr1P02760_001	Banana	cytosol	7.03	27.13
KRH07807	Soybean	cytosol, mitochondrion, nucleus	1.81	13.43

Protein Annotations

EnsemblPlants:Solyc02g061610.1.1	EnsemblPlantsGene:Solyc02g061610.1	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000626	InterPro:Ubiquilin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	PANTHER:PTHR10677	PANTHER:PTHR10677:SF38
PFAM:PF00240	PFscan:PS50053	SEG:seg	SMART:SM00213	SUPFAM:SSF54236	UniParc:UPI0002767CD6
UniProt:K4B651	MapMan:19.3.4.6	:	:	:	:

Description

No Description!

Coordinates

chr2:-:33104226..33111074

Molecular Weight (calculated)

54657.3 Da

IEP (calculated)

4.366

GRAVY (calculated)

-0.397

Length

498 amino acids

Sequence
(BLAST)

001: MDGGDTTQTV KDDSGDIAVG GKTVTINIRC VNDSELSVQV SLDCTVGLFK FIISQPTDIP AEEQKVIYNG RILKDDQTLK SCGLEADQTV HLIRGSAVAA
101: SASATNVVNP NANQDAPRVD VPTTGGLFVR VGRGPLFSRL GKRGGSFGAG LPDFEQVQQH DSIMMREILN MPLVQDLVND PGIICNFIVN SPQMREYVNL
201: NPELPHIFND PAIFLQIWEA ARNELMHETI RTIQWSLSHT ESSPEESNML RHMYVDVQEP FLNATSMAGD TRNDSGINPF VALLGAQEQG RSRSTNPPAT
301: CSDTTANPPA PNSNPLSDPW ASADFGGAQM NTSPRSNTSR NIWGPSPGGL DDIADLQRML GGIPGASSEN QLIGYPSISQ IMQHINQIME LDPNSHNGDM
401: MPNRELIHQL MSSERMQEYL VQQGLFPYLD HPQSNQEQDQ GEADETEYQN GAVEVARNVV DSTLERASLH EFPGLNNLGP EELYVMLFLQ VVRLHRIL

Best Arabidopsis Sequence Match ( AT2G17200.1 )
(BLAST)

001: MGGEGDSSQP QSGEGEAVAV NIRCSNGTKF SVKTSLDSTV ESFKELVAQS SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTIHMVRGS APSSAPPPAP
101: AASQTTAPSV TRGVGSDNSS NLGGASPGES LFPGLGFNPL GGGNAMSGLF GAGLPDLVQT QQQLAQNPNM IRDMMNTPAI QNLMNNPEFM RSMIMNNPQM
201: RELVDRNPEL GHVLNDPSIL RQTLEAARNP ELMREMMRNT DRAMSNIESM PEGFNMLRRM YENVQEPLMN ATTMSGNAGN NTGSNPFAAL LGNQGVTTQG
301: SDASNNSSTP NAGTGTIPNA NPLPNPWGAT GGQTTAPGRT NVGGDARSPG LGGLGGLGSL GGLGGLGMLG ADSPLGATPD ASQLSQLLQN PAISQMMQSV
401: FSNPQYMNQL MSLNPQLRSM LDSNPQLREM MQNPDFLRQF SSPEMMQQMM TLQQSLSQNR NTASQDAGQT GAATGNNGGL DLLMNMFGSL GAGGLSGTNQ
501: SNVPPEERYA TQLQQLQEMG FYDRAENIRA LLATNGNVNA AVERLLGSIG Q

Arabidopsis Description

DSK2BUbiquitin domain-containing protein DSK2b [Source:UniProtKB/Swiss-Prot;Acc:Q9SII8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.