Factsheet for Zm00001d029782_P004

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d016016_P001
Zm00001d024336_P001
Zm00001d028396_P001
Zm00001d031028_P004
Zm00001d040834_P001
Zm00001d043386_P001
Zm00001d047941_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17190.1	Zm00001d031028_P004	AT1G79810.1	23336935
AT2G17200.1	Zm00001d031028_P004	AT1G79810.1	23336935
AT2G17200.1	Zm00001d016016_P001	AT3G16120.1	21798944
AT2G17200.1	Zm00001d043386_P001	AT3G16120.1	21798944
AT2G17200.1	Zm00001d024336_P001	AT4G38630.1	20059542
AT2G17200.1	Zm00001d028396_P001	AT4G38630.1	20059542
AT2G17200.1	Zm00001d040834_P001	AT4G38630.1	20059542
AT2G17200.1	Zm00001d047941_P001	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92003	Sorghum	cytosol	87.69	89.66
Zm00001d047373_P001	Maize	cytosol	84.15	86.63
Os10t0542200-01	Rice	plasma membrane, plastid	74.7	77.04
TraesCS1D01G206500.1	Wheat	cytosol	72.01	75.71
TraesCS1B01G217000.1	Wheat	cytosol	72.51	75.7
TraesCS1A01G203000.1	Wheat	cytosol	71.67	74.82
HORVU1Hr1G052260.2	Barley	cytosol	69.81	72.5
Zm00001d027514_P002	Maize	cytosol	62.73	69.4
Zm00001d048343_P001	Maize	cytosol	62.23	69.23
GSMUA_Achr5P11110_001	Banana	cytosol	55.48	61.73
PGSC0003DMT400048093	Potato	extracellular	8.26	60.49
KRH07807	Soybean	cytosol, mitochondrion, nucleus	6.75	59.7
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	45.19	58.9
Solyc03g032160.2.1	Tomato	plastid	54.64	58.17
Solyc02g082800.2.1	Tomato	plastid	53.96	57.87
PGSC0003DMT400003987	Potato	cytosol	53.63	57.61
KRH76549	Soybean	cytosol	51.77	56.75
KRH28904	Soybean	cytosol	51.26	56.19
VIT_03s0038g03680.t01	Wine grape	cytosol	54.47	55.69
AT2G17190.1	Thale cress	cytosol	50.25	55.39
KRH07920	Soybean	cytosol	50.42	55.27
CDX88001	Canola	cytosol	50.42	55.17
AT2G17200.1	Thale cress	cytosol	50.93	54.81
CDX75489	Canola	cytosol	47.55	54.65
CDY26796	Canola	cytosol	48.74	54.63
Bra002028.1-P	Field mustard	cytosol, plastid	50.59	54.55
Bra009657.1-P	Field mustard	cytosol	50.76	54.53
CDY31374	Canola	cytosol, plastid	49.24	54.48
CDX71349	Canola	cytosol	50.25	54.38
KRH69678	Soybean	nucleus	49.92	54.31
Bra011602.1-P	Field mustard	cytosol	41.82	54.27
CDY07870	Canola	cytosol	49.07	54.09
Bra037281.1-P	Field mustard	cytosol	49.41	54.06
CDY47488	Canola	cytosol	47.72	53.9
VIT_04s0210g00220.t01	Wine grape	cytosol, nucleus	44.18	50.78
Solyc02g060600.1.1	Tomato	cytosol	21.42	45.2
PGSC0003DMT400045106	Potato	cytosol	34.91	44.61
Solyc02g061720.1.1	Tomato	cytosol	23.95	42.01
Solyc02g060580.1.1	Tomato	cytosol	21.59	41.83
Solyc02g061670.1.1	Tomato	cytosol	24.11	40.74
GSMUA_Achr1P02760_001	Banana	cytosol	8.43	38.76
Solyc02g061680.1.1	Tomato	cytosol	30.69	37.68
Solyc02g060590.1.1	Tomato	cytosol	8.43	37.31
Solyc02g061610.1.1	Tomato	cytosol	30.19	35.94
Solyc02g061710.1.1	Tomato	nucleus	14.84	35.92
Solyc02g061640.1.1	Tomato	cytosol	8.09	35.82
CDX69126	Canola	nucleus	41.15	33.84
Solyc02g060570.1.1	Tomato	cytosol	32.55	27.22

Protein Annotations

Gene3D:1.10.8.10	EntrezGene:100382017	MapMan:19.3.4.6	Gene3D:3.10.20.90	UniProt:A0A1D6K7R6	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626	InterPro:IPR015940	ProteinID:ONL99591.1	PFAM:PF00240
PFAM:PF00627	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10677	PANTHER:PTHR10677:SF28	SMART:SM00165
SMART:SM00213	SMART:SM00727	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd	InterPro:UBA
InterPro:UBA-like_sf	UniParc:UPI000842B914	InterPro:Ubiquilin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	EnsemblPlantsGene:Zm00001d029782
EnsemblPlants:Zm00001d029782_P004	EnsemblPlants:Zm00001d029782_T004	SEG:seg	:	:	:

Description

Ubiquitin domain-containing protein DSK2b

Coordinates

chr1:-:86636387..86641408

Molecular Weight (calculated)

61578.8 Da

IEP (calculated)

4.614

GRAVY (calculated)

-0.294

Length

593 amino acids

Sequence
(BLAST)

001: MASGGEGAGS GESPPAASVE AAAGEATLHI RCANGSKFTV QTDLGATVGG FKEVVAGSCD VPAPQQRLIY KGRILKDEQT LESYGVETDH TIHLVRGVAP
101: PAASSAPAAA SSLASSTLSS VPAGGLGDLF PGVGAPGSGR SSGIFGPGFP ELEQVEQHLS QNPNLMREIM NMPAMQNLMN NPDLIRNMIM SNPQMREIMD
201: RNPDLAHVLN DPSVLRQTLE AARNPEIMRE MMRNTDRAMS NIESSPEGFN MLRRMYETVQ EPFLNATTMS GEGNTASNPF AALLGNQGSN QPGQGQPATY
301: TPTIGSESTT GTPAPNTNPL PNPWSTNAGS AQGATRSSGN TRTGASGHVG GTGATGGLGG LGSPDLSSLL GGLAGSPRTG ASGGLGGLGS PDLGNMLGGS
401: PDVSLFSQML QNPAMMQMMQ SIMSDPQTMN QLLSFNPNAR NLMESNPQMR EIFQNPEFLR QLTSPETLQQ SLLGQLGQHQ PNQGRNNSGS ATGKLLVTFS
501: LFLLHLDQYI AISGTPGNPS LDTLMSMLSG LGSGGGIGVP NTSNVPPEEL YATQLTQLQE MGFIDTAENI QALLATAGNV HAAVERLLGN LGQ

Best Arabidopsis Sequence Match ( AT2G17190.1 )
(BLAST)

001: MGGEADSRQP LTAEGVAVAV NVRCSNGTKF SVTTSLDSTV ESFKELIAQN SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTVHMVRGF VPSSPSAPAA
101: NAGNQTTAPQ AVGSNDSSNL GGGESLFPGL GFNPLGGGNA MAGLFGSGLP DLEQAQQQLA QNPNMIREMM NTPAIQNLMN NPEFMRSMIM NNPQMRELVD
201: RNPELGHVLN DPSILRQTLE AARNPELMRE MMRNTDRAMS NIESMPEGFN MLRRMYENVQ EPLMNATTMS ENAGNNTSSN PFAALLGNQG VTTQGSDTSN
301: NISAPNAETG TPNANPLPNP WGATAGQTTA PGRTNAGLGG LGGLGGLGGL GMLGADSPLG ATPDASQLSQ ILQNPAMSQM MQSVLSNPQY MNQLMSLNPQ
401: LRSMLDMNPQ LREMMQNPDF LRQFSSPEMM QQMMSLQQSL FSQNRNTAGQ DPTQTGAATG TANNGGLDLL MNMFGSLGAG GLSGTNQPNV PPEERFATQL
501: QQLQEMGFYD RAENIRALLA TNGNVNAAVE RLLGSIGQ

Arabidopsis Description

DSK2AUbiquitin domain-containing protein DSK2a [Source:UniProtKB/Swiss-Prot;Acc:Q9SII9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.