CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76549	Soybean	cytosol	92.42	92.42
KRH07807	Soybean	cytosol, mitochondrion, nucleus	9.98	80.6
KRH07920	Soybean	cytosol	80.59	80.59
KRH69678	Soybean	nucleus	80.04	79.45
Solyc02g082800.2.1	Tomato	plastid	65.62	64.2
PGSC0003DMT400003987	Potato	cytosol	64.51	63.22
Solyc03g032160.2.1	Tomato	plastid	63.59	61.76
VIT_04s0210g00220.t01	Wine grape	cytosol, nucleus	57.67	60.47
PGSC0003DMT400048093	Potato	extracellular	8.87	59.26
GSMUA_Achr5P11110_001	Banana	cytosol	56.93	57.79
GSMUA_Achr3P00530_001	Banana	cytosol	58.04	56.78
Os03t0131300-01	Rice	plasma membrane	56.01	56.74
TraesCS4B01G325900.2	Wheat	cytosol	55.27	56.2
GSMUA_Achr1P14990_001	Banana	cytosol	57.3	55.96
TraesCS1D01G206500.1	Wheat	cytosol	58.23	55.85
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	46.95	55.82
TraesCS1B01G217000.1	Wheat	cytosol	58.04	55.28
EER92919	Sorghum	cytosol	54.71	55.02
TraesCS1A01G203000.1	Wheat	cytosol	57.67	54.93
Zm00001d048343_P001	Maize	cytosol	53.97	54.78
HORVU4Hr1G082050.15	Barley	cytosol	53.97	54.68
Zm00001d027514_P002	Maize	cytosol	53.42	53.92
Os10t0542200-01	Rice	plasma membrane, plastid	57.12	53.74
EER92003	Sorghum	cytosol	57.49	53.62
Zm00001d047373_P001	Maize	cytosol	56.93	53.47
GSMUA_Achr7P04060_001	Banana	cytosol	53.23	52.84
TraesCS5A01G498100.1	Wheat	cytosol	55.27	52.64
TraesCS4D01G322800.1	Wheat	cytosol	55.08	52.46
HORVU1Hr1G052260.2	Barley	cytosol	54.53	51.66
Zm00001d029782_P004	Maize	cytosol	56.19	51.26
PGSC0003DMT400045106	Potato	cytosol	43.25	50.43
Solyc02g060580.1.1	Tomato	cytosol	26.43	46.73
Solyc02g060600.1.1	Tomato	cytosol	22.74	43.77
Solyc02g061670.1.1	Tomato	cytosol	27.73	42.73
Solyc02g061720.1.1	Tomato	cytosol	26.62	42.6
Solyc02g060590.1.1	Tomato	cytosol	10.54	42.54
Solyc02g061680.1.1	Tomato	cytosol	37.52	42.03
Solyc02g061710.1.1	Tomato	nucleus	17.93	39.59
Solyc02g061610.1.1	Tomato	cytosol	36.41	39.56
Solyc02g061640.1.1	Tomato	cytosol	9.61	38.81
GSMUA_Achr1P02760_001	Banana	cytosol	7.76	32.56
Solyc02g060570.1.1	Tomato	cytosol	38.08	29.05

Protein Annotations

Gene3D:1.10.8.10	EntrezGene:100780421	MapMan:19.3.4.6	Gene3D:3.10.20.90	EMBL:ACUP02006770	EnsemblPlantsGene:GLYMA_11G084700
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1LI99	InterPro:IPR000626	InterPro:IPR015940
ProteinID:KRH28903.1	EnsemblPlants:KRH28904	ProteinID:KRH28904	ProteinID:KRH28904.1	PFAM:PF00240	PFAM:PF00627
PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10677	PANTHER:PTHR10677:SF39	SMART:SM00165	SMART:SM00213
SMART:SM00727	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd	InterPro:UBA	InterPro:UBA-like_sf
UniParc:UPI000233C3AA	InterPro:Ubiquilin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	SEG:seg	:

Description

hypothetical protein

Coordinates

chr11:+:6367696..6374677

Molecular Weight (calculated)

57332.4 Da

IEP (calculated)

4.469

GRAVY (calculated)

-0.545

Length

541 amino acids

Sequence
(BLAST)

001: MGGDDAAAES ATTERNAANE VNINIRCSNG SKFSVQIGLD STVRSFKEAV AHNCDISSDQ QRLIYKGRIL KDDQPLQSYG LEADHTVHLV RGFSPSNTTG
101: GTNSGGGGGG NTTTANTRGA GANEGGGLGG PGFGASPFPG LGGNNGMGGG GLNGLFGAGF PDLEQMQQPF LSNPNLMRDI MNTPAMQNLI NNPDIVRNLI
201: MNNPQMQELM DRNPELAHIL NDPSTLRQTL EATRNPEIMR EMMRNTDRAM SNIESSPEGF NMLRRMYENV QEPFLNATTM AGNTGNDAAA VRNQSTNPST
301: TNSEATSPVP NTNPLPNPWS STGTGGGGQT NTRRSTTTGG DARQPAPTGL GGLGLPDLEG MMGGMPDTAM LTQLMQNPAI SQMMQSILSN PQTMNQILGV
401: NNEQRGMPDL NSLREVMQNP EFLRLFSSPE TLQQLLSFQQ TLLSQLGQQQ SAQEPGQTGG GTGPLNNMGL EMLSSMFGGL GAGSLAVPNR SNEPPEQLYA
501: TQLSQLQEMG FFDTQENIRA LIATSGNVHA AVERLLGNPG Q

Best Arabidopsis Sequence Match ( AT2G17190.1 )
(BLAST)

001: MGGEADSRQP LTAEGVAVAV NVRCSNGTKF SVTTSLDSTV ESFKELIAQN SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTVHMVRGF VPSSPSAPAA
101: NAGNQTTAPQ AVGSNDSSNL GGGESLFPGL GFNPLGGGNA MAGLFGSGLP DLEQAQQQLA QNPNMIREMM NTPAIQNLMN NPEFMRSMIM NNPQMRELVD
201: RNPELGHVLN DPSILRQTLE AARNPELMRE MMRNTDRAMS NIESMPEGFN MLRRMYENVQ EPLMNATTMS ENAGNNTSSN PFAALLGNQG VTTQGSDTSN
301: NISAPNAETG TPNANPLPNP WGATAGQTTA PGRTNAGLGG LGGLGGLGGL GMLGADSPLG ATPDASQLSQ ILQNPAMSQM MQSVLSNPQY MNQLMSLNPQ
401: LRSMLDMNPQ LREMMQNPDF LRQFSSPEMM QQMMSLQQSL FSQNRNTAGQ DPTQTGAATG TANNGGLDLL MNMFGSLGAG GLSGTNQPNV PPEERFATQL
501: QQLQEMGFYD RAENIRALLA TNGNVNAAVE RLLGSIGQ

Arabidopsis Description

DSK2AUbiquitin domain-containing protein DSK2a [Source:UniProtKB/Swiss-Prot;Acc:Q9SII9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.