Factsheet for GSMUA_Achr1P02770_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P11290_001
GSMUA_Achr2P19900_001
GSMUA_Achr4P25580_001
GSMUA_Achr7P14400_001
GSMUA_Achr7P25190_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17190.1	GSMUA_Achr10P...	AT1G79810.1	23336935
AT2G17200.1	GSMUA_Achr10P...	AT1G79810.1	23336935
AT2G17200.1	GSMUA_Achr10P...	AT3G16120.1	21798944
AT2G17200.1	GSMUA_Achr10P...	AT3G16120.1	21798944
AT2G17200.1	GSMUA_Achr2P19900_001	AT3G16120.1	21798944
AT2G17200.1	GSMUA_Achr7P14400_001	AT3G16120.1	21798944
AT2G17200.1	GSMUA_Achr7P25190_001	AT3G16120.1	21798944
AT2G17200.1	GSMUA_Achr11P...	AT4G38630.1	20059542
AT2G17200.1	GSMUA_Achr2P11290_001	AT4G38630.1	20059542
AT2G17200.1	GSMUA_Achr4P25580_001	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07807	Soybean	cytosol, mitochondrion, nucleus	9.67	65.67
PGSC0003DMT400048093	Potato	extracellular	11.43	64.2
GSMUA_Achr5P11110_001	Banana	cytosol	74.07	63.23
EER92919	Sorghum	cytosol	60.0	50.74
Zm00001d048343_P001	Maize	cytosol	59.12	50.47
Os03t0131300-01	Rice	plasma membrane	58.68	50.0
Zm00001d027514_P002	Maize	cytosol	58.68	49.81
TraesCS4B01G325900.2	Wheat	cytosol	57.36	49.06
HORVU4Hr1G082050.15	Barley	cytosol	57.14	48.69
VIT_03s0038g03680.t01	Wine grape	cytosol	61.76	48.45
TraesCS1D01G206500.1	Wheat	cytosol	60.0	48.4
Os10t0542200-01	Rice	plasma membrane, plastid	61.1	48.35
TraesCS1B01G217000.1	Wheat	cytosol	60.22	48.24
TraesCS1A01G203000.1	Wheat	cytosol	60.0	48.06
EER92003	Sorghum	cytosol	61.1	47.93
KRH07920	Soybean	cytosol	56.92	47.87
GSMUA_Achr1P14990_001	Banana	cytosol	58.24	47.83
Solyc02g082800.2.1	Tomato	plastid	57.8	47.56
GSMUA_Achr3P00530_001	Banana	cytosol	57.8	47.56
PGSC0003DMT400003987	Potato	cytosol	57.58	47.46
Zm00001d047373_P001	Maize	cytosol	60.0	47.4
KRH76549	Soybean	cytosol	56.26	47.32
KRH69678	Soybean	nucleus	56.48	47.16
KRH28904	Soybean	cytosol	55.82	46.95
CDX88001	Canola	cytosol	55.6	46.68
CDY31374	Canola	cytosol, plastid	54.95	46.64
Solyc03g032160.2.1	Tomato	plastid	56.92	46.5
Bra002028.1-P	Field mustard	cytosol, plastid	55.82	46.18
TraesCS5A01G498100.1	Wheat	cytosol	57.58	46.13
AT2G17200.1	Thale cress	cytosol	55.82	46.1
CDY07870	Canola	cytosol	54.51	46.1
GSMUA_Achr7P04060_001	Banana	cytosol	55.16	46.05
Bra011602.1-P	Field mustard	cytosol	46.15	45.95
TraesCS4D01G322800.1	Wheat	cytosol	57.36	45.95
AT2G17190.1	Thale cress	cytosol	54.29	45.91
Bra009657.1-P	Field mustard	cytosol	55.38	45.65
CDX71349	Canola	cytosol	54.95	45.62
Zm00001d029782_P004	Maize	cytosol	58.9	45.19
CDY26796	Canola	cytosol	52.31	44.99
HORVU1Hr1G052260.2	Barley	cytosol	56.26	44.83
CDX75489	Canola	cytosol	50.55	44.57
CDY47488	Canola	cytosol	51.43	44.57
Bra037281.1-P	Field mustard	cytosol	52.75	44.28
VIT_04s0210g00220.t01	Wine grape	cytosol, nucleus	48.79	43.02
Solyc02g061710.1.1	Tomato	nucleus	19.34	35.92
PGSC0003DMT400045106	Potato	cytosol	34.29	33.62
Solyc02g060600.1.1	Tomato	cytosol	20.44	33.1
Solyc02g061670.1.1	Tomato	cytosol	24.4	31.62
Solyc02g060580.1.1	Tomato	cytosol	20.66	30.72
Solyc02g061680.1.1	Tomato	cytosol	31.43	29.61
Solyc02g061610.1.1	Tomato	cytosol	31.43	28.71
Solyc02g061720.1.1	Tomato	cytosol	21.32	28.7
CDX69126	Canola	nucleus	43.08	27.18
Solyc02g060570.1.1	Tomato	cytosol	31.87	20.45
Solyc02g060590.1.1	Tomato	cytosol	4.62	15.67
Solyc02g061640.1.1	Tomato	cytosol	4.62	15.67
GSMUA_Achr1P02760_001	Banana	cytosol	1.76	6.2

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.6	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr1G02770_001
EnsemblPlants:GSMUA_Achr1P02770_001	EnsemblPlants:GSMUA_Achr1T02770_001	InterPro:IPR015940	UniProt:M0RWI5	PFAM:PF00627	PFscan:PS50030
PANTHER:PTHR10677	PANTHER:PTHR10677:SF38	SMART:SM00165	SMART:SM00727	SUPFAM:SSF46934	InterPro:STI1_HS-bd
SignalP:SignalP-noTM	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI00029581AD	InterPro:Ubiquilin	SEG:seg

Description

Putative Ubiquilin-1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G02770_001]

Coordinates

chr1:+:2243437..2246975

Molecular Weight (calculated)

49647.8 Da

IEP (calculated)

4.484

GRAVY (calculated)

-0.395

Length

455 amino acids

Sequence
(BLAST)

001: MTQVMYLCKL YLIFMSLYIG VESDHTIHLI RGSARSAVSV NTEVHNQGPS RTSDRNSASG FFGTGIPEFD QMQQLTQNCN VTREIMNLPA IQNLINNPDI
101: IRSLFMDNPQ MREIIDRNPD LAHVLNDSST LRQTLEAVRN PELMREVMRN SDRVMSNIES SPEGFNMLRR MYETVQEPFF NAATMGGDLG GNVGSNAFSA
201: LLINQVTGQD SERSSNLTTS SEPTTGSGPN TNPLPNPWGS NAVGAQPVST RSDPGSTTGI PGLGGLGSLD MEHMVGRLQD SSQLSQVLQN PAMMQTMQNL
301: LSDPQYVNQM LDLNPNMRGL LESNTQLREM LQNPDFLCQL MSPETMQQLL SFRQSMFSHV GRQQSSLEQG QTGGGVGTTN NTGLDFLINM FGGLGTGGPG
401: VPNTSNVPPE ELYATQLSQL QEMGFFDTQE NIRALTATAG NVHAAVERLL GNSGQ

Best Arabidopsis Sequence Match ( AT2G17200.1 )
(BLAST)

001: MGGEGDSSQP QSGEGEAVAV NIRCSNGTKF SVKTSLDSTV ESFKELVAQS SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTIHMVRGS APSSAPPPAP
101: AASQTTAPSV TRGVGSDNSS NLGGASPGES LFPGLGFNPL GGGNAMSGLF GAGLPDLVQT QQQLAQNPNM IRDMMNTPAI QNLMNNPEFM RSMIMNNPQM
201: RELVDRNPEL GHVLNDPSIL RQTLEAARNP ELMREMMRNT DRAMSNIESM PEGFNMLRRM YENVQEPLMN ATTMSGNAGN NTGSNPFAAL LGNQGVTTQG
301: SDASNNSSTP NAGTGTIPNA NPLPNPWGAT GGQTTAPGRT NVGGDARSPG LGGLGGLGSL GGLGGLGMLG ADSPLGATPD ASQLSQLLQN PAISQMMQSV
401: FSNPQYMNQL MSLNPQLRSM LDSNPQLREM MQNPDFLRQF SSPEMMQQMM TLQQSLSQNR NTASQDAGQT GAATGNNGGL DLLMNMFGSL GAGGLSGTNQ
501: SNVPPEERYA TQLQQLQEMG FYDRAENIRA LLATNGNVNA AVERLLGSIG Q

Arabidopsis Description

DSK2BUbiquitin domain-containing protein DSK2b [Source:UniProtKB/Swiss-Prot;Acc:Q9SII8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.