Factsheet for GSMUA_Achr2P19900_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P04520_001
GSMUA_Achr2P13770_001
GSMUA_Achr3P05620_001
GSMUA_Achr3P05640_001
GSMUA_Achr4P33120_001
GSMUA_Achr5P07300_001
GSMUA_Achr6P00160_001
GSMUA_Achr7P15940_001
GSMUA_Achr8P09820_001
GSMUA_Achr9P13850_001
GSMUA_Achr9P13870_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16120.1	GSMUA_Achr3P05640_001	AT2G24550.1	21798944
AT3G16120.1	GSMUA_Achr7P15940_001	AT2G24550.1	21798944
AT3G16120.1	GSMUA_Achr9P13850_001	AT2G24550.1	21798944
AT3G16120.1	GSMUA_Achr10P...	AT3G21175.1	21798944
AT3G16120.1	GSMUA_Achr2P04520_001	AT3G21175.1	21798944
AT3G16120.1	GSMUA_Achr3P05620_001	AT3G21175.1	21798944
AT3G16120.1	GSMUA_Achr9P13870_001	AT3G21175.1	21798944
AT3G16120.1	GSMUA_Achr10P...	AT3G53320.1	21798944
AT3G16120.1	GSMUA_Achr5P07300_001	AT3G53320.1	21798944
AT3G16120.1	GSMUA_Achr2P13770_001	AT3G57540.1	21798944
AT3G16120.1	GSMUA_Achr4P33120_001	AT3G57540.1	21798944
AT3G16120.1	GSMUA_Achr6P00160_001	AT3G57540.1	21798944
AT3G16120.1	GSMUA_Achr8P09820_001	AT5G14910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	93.55	93.55
GSMUA_Achr7P14400_001	Banana	cytosol	87.1	87.1
Solyc12g044240.1.1	Tomato	cytosol	86.02	85.11
PGSC0003DMT400019607	Potato	cytosol	84.95	84.04
AT1G52245.1	Thale cress	cytosol	82.8	81.91
Bra014318.1-P	Field mustard	cytosol	82.8	81.91
CDY02551	Canola	cytosol	82.8	81.91
GSMUA_Achr7P25190_001	Banana	cytosol	80.65	80.65
VIT_09s0002g04280.t01	Wine grape	cytosol	81.72	80.0
Bra018957.1-P	Field mustard	cytosol	80.65	79.79
Solyc03g120690.2.1	Tomato	cytosol	79.57	78.72
KRH09878	Soybean	cytosol	79.57	77.89
PGSC0003DMT400006527	Potato	cytosol	78.49	77.66
GSMUA_Achr10P...	Banana	cytosol	84.95	77.45
AT3G16120.1	Thale cress	cytosol	77.42	77.42
Bra027190.1-P	Field mustard	cytosol	77.42	77.42
CDX97722	Canola	cytosol	77.42	77.42
KRH23441	Soybean	cytosol	78.49	76.84
CDY30135	Canola	cytosol	76.34	76.34
KRH60274	Soybean	cytosol	74.19	74.19
KRH41561	Soybean	cytosol	73.12	73.12
VIT_11s0016g03770.t01	Wine grape	cytosol	72.04	69.79
CDY47528	Canola	cytosol	76.34	54.62
GSMUA_Achr2P14130_001	Banana	cytosol	56.99	48.62
GSMUA_Achr9P29930_001	Banana	cytosol	50.54	41.96
GSMUA_Achr11P...	Banana	cytosol	34.41	41.56
GSMUA_Achr8P30040_001	Banana	cytosol	34.41	41.56
GSMUA_AchrUn_...	Banana	cytosol	29.03	30.34
GSMUA_Achr1P20660_001	Banana	cytosol	44.09	30.15
GSMUA_Achr3P22950_001	Banana	cytosol, mitochondrion	41.94	27.66
GSMUA_Achr7P12500_001	Banana	cytosol	38.71	24.83
GSMUA_Achr9P27210_001	Banana	nucleus	37.63	23.03

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.1	InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2	GO:GO:0003674	GO:GO:0003774
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005874	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016787	GO:GO:0030286
EnsemblPlantsGene:GSMUA_Achr2G19900_001	EnsemblPlants:GSMUA_Achr2P19900_001	EnsemblPlants:GSMUA_Achr2T19900_001	InterPro:IPR037177	UniProt:M0S9I1	PFAM:PF01221
PANTHER:PTHR11886	PANTHER:PTHR11886:SF47	SMART:SM01375	SUPFAM:SSF54648	UniParc:UPI000295EECB	:

Description

Putative Dynein light chain LC6, flagellar outer arm [Source:GMGC_GENE;Acc:GSMUA_Achr2G19900_001]

Coordinates

chr2:-:19880885..19881640

Molecular Weight (calculated)

10400.7 Da

IEP (calculated)

5.618

GRAVY (calculated)

0.258

Length

93 amino acids

Sequence
(BLAST)

1: MLEGKAMIQD TDMPVKMQLQ AMSCASEALD LFDVLDCKSI ATHIKKEFDL RYGPGWQCVV GSNFGCFFTH TKGTFIYFCL ETLNFLIFKG AAA

Best Arabidopsis Sequence Match ( AT1G52245.1 )
(BLAST)

1: MLEGKAMVED SDMPVKMQMQ AMAFASQALD LFDVFDCKSI AGHIKKEFDE RYGSGWQCVV GSNFGCFFTH SKGTFIYFQL ETLKFLIFKG ASTP

Arabidopsis Description

At1g52250 [Source:UniProtKB/TrEMBL;Acc:Q9M810]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.