Factsheet for GSMUA_Achr3P22950_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25852	Soybean	cytosol	28.37	67.8
KRH27167	Soybean	cytosol	41.84	62.77
GSMUA_Achr9P29930_001	Banana	cytosol	46.81	58.93
VIT_19s0014g03710.t01	Wine grape	cytosol	45.39	58.72
GSMUA_Achr2P14130_001	Banana	cytosol	45.39	58.72
EER97375	Sorghum	cytosol	43.97	54.39
AT4G27360.1	Thale cress	cytosol	39.72	54.37
Solyc07g063610.2.1	Tomato	cytosol	42.55	53.1
Bra026356.1-P	Field mustard	cytosol	37.59	52.48
CDY29301	Canola	cytosol	37.59	52.48
CDX89255	Canola	cytosol	37.59	52.48
KRH55664	Soybean	cytosol, mitochondrion, peroxisome	39.72	51.38
PGSC0003DMT400049549	Potato	cytosol	42.55	49.59
GSMUA_Achr7P25190_001	Banana	cytosol	28.37	43.01
GSMUA_Achr2P19900_001	Banana	cytosol	27.66	41.94
GSMUA_Achr10P...	Banana	cytosol	26.95	40.86
GSMUA_Achr7P14400_001	Banana	cytosol	26.24	39.78
GSMUA_Achr10P...	Banana	cytosol	28.37	39.22
GSMUA_Achr8P30040_001	Banana	cytosol	20.57	37.66
GSMUA_Achr11P...	Banana	cytosol	20.57	37.66
GSMUA_AchrUn_...	Banana	cytosol	18.44	29.21
GSMUA_Achr1P20660_001	Banana	cytosol	23.4	24.26
GSMUA_Achr9P27210_001	Banana	nucleus	24.82	23.03
GSMUA_Achr7P12500_001	Banana	cytosol	23.4	22.76

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.2	InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2	GO:GO:0003674	GO:GO:0003774
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005874	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016787	GO:GO:0030286
EnsemblPlantsGene:GSMUA_Achr3G22950_001	EnsemblPlants:GSMUA_Achr3P22950_001	EnsemblPlants:GSMUA_Achr3T22950_001	InterPro:IPR037177	UniProt:M0SH11	PFAM:PF01221
PANTHER:PTHR11886	PANTHER:PTHR11886:SF22	SMART:SM01375	SUPFAM:SSF54648	UniParc:UPI0002963C36	SEG:seg

Description

Putative Dynein light chain LC6, flagellar outer arm [Source:GMGC_GENE;Acc:GSMUA_Achr3G22950_001]

Coordinates

chr3:-:23780168..23785427

Molecular Weight (calculated)

15511.7 Da

IEP (calculated)

7.096

GRAVY (calculated)

0.204

Length

141 amino acids

Sequence
(BLAST)

001: MRLAQHICFA WQRVLAIHDG ESRAVIGVTD MLQRLQQDAL RLAGKALVDL FDITEATEIA RFIKKEFDGS YRAGWQYMVG THFGSFATCH NGYFIYLSIG
101: SLAIVLLGGA PDAEADKSHF ISLESVRVSC TCLCIHSGGG R

Best Arabidopsis Sequence Match ( AT4G27360.1 )
(BLAST)

001: MLEGKAVMGD TDMKQTMKED ALSLASKALD CFDVTEPTQI ARFIKKEFDR SYGSGWQCIV GTHFGSFVTH CSGCFIHFSV GSLTILLFKG SVGEPAPPDR
101: CSS

Arabidopsis Description

Dynein light chain type 1 family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZW5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.