Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g044240.1.1 | Tomato | cytosol | 88.42 | 89.36 |
| PGSC0003DMT400019607 | Potato | cytosol | 87.37 | 88.3 |
| Solyc03g120690.2.1 | Tomato | cytosol | 84.21 | 85.11 |
| PGSC0003DMT400006527 | Potato | cytosol | 83.16 | 84.04 |
| KRH09878 | Soybean | cytosol | 82.11 | 82.11 |
| GSMUA_Achr2P19900_001 | Banana | cytosol | 80.0 | 81.72 |
| KRH23441 | Soybean | cytosol | 81.05 | 81.05 |
| CDY02551 | Canola | cytosol | 80.0 | 80.85 |
| AT1G52245.1 | Thale cress | cytosol | 80.0 | 80.85 |
| Bra014318.1-P | Field mustard | cytosol | 80.0 | 80.85 |
| GSMUA_Achr10P... | Banana | cytosol | 78.95 | 80.65 |
| Bra018957.1-P | Field mustard | cytosol | 78.95 | 79.79 |
| AT3G16120.1 | Thale cress | cytosol | 75.79 | 77.42 |
| CDX97722 | Canola | cytosol | 74.74 | 76.34 |
| Bra027190.1-P | Field mustard | cytosol | 74.74 | 76.34 |
| VIT_11s0016g03770.t01 | Wine grape | cytosol | 76.84 | 76.04 |
| GSMUA_Achr7P14400_001 | Banana | cytosol | 73.68 | 75.27 |
| CDY30135 | Canola | cytosol | 73.68 | 75.27 |
| GSMUA_Achr7P25190_001 | Banana | cytosol | 71.58 | 73.12 |
| KXG33416 | Sorghum | cytosol | 71.58 | 73.12 |
| Zm00001d043386_P001 | Maize | cytosol | 70.53 | 72.04 |
| TraesCS3D01G296300.1 | Wheat | cytosol | 70.53 | 67.68 |
| GSMUA_Achr10P... | Banana | cytosol | 72.63 | 67.65 |
| TraesCS3A01G305600.1 | Wheat | cytosol | 69.47 | 66.67 |
| TraesCS3B01G330900.1 | Wheat | cytosol | 69.47 | 66.67 |
| TraesCS1D01G203800.1 | Wheat | cytosol | 68.42 | 65.66 |
| TraesCS2A01G245600.1 | Wheat | cytosol | 68.42 | 65.66 |
| TraesCS5B01G340700.1 | Wheat | cytosol | 67.37 | 64.65 |
| TraesCS1B01G110900.1 | Wheat | cytosol | 67.37 | 64.65 |
| TraesCS2B01G143000.1 | Wheat | cytosol | 66.32 | 63.64 |
| HORVU3Hr1G073190.1 | Barley | cytosol | 69.47 | 63.46 |
| Os02t0269200-01 | Rice | cytosol | 64.21 | 61.62 |
| TraesCS2B01G427400.1 | Wheat | cytosol | 64.21 | 61.62 |
| EES06648 | Sorghum | cytosol | 63.16 | 60.61 |
| TraesCS4A01G427300.1 | Wheat | cytosol | 64.21 | 58.1 |
| TraesCS7A01G061500.1 | Wheat | cytosol | 64.21 | 58.1 |
| TraesCS7D01G056400.1 | Wheat | cytosol | 64.21 | 58.1 |
| TraesCS7A01G284100.1 | Wheat | cytosol, plastid | 52.63 | 57.47 |
| CDY47528 | Canola | cytosol | 72.63 | 53.08 |
| Zm00001d016016_P001 | Maize | cytosol | 63.16 | 50.0 |
| TraesCS4A01G428300.1 | Wheat | cytosol | 64.21 | 45.52 |
| VIT_19s0014g03710.t01 | Wine grape | cytosol | 51.58 | 44.95 |
| VIT_08s0007g01270.t01 | Wine grape | cytosol | 43.16 | 40.59 |
| HORVU7Hr1G011400.2 | Barley | plastid | 65.26 | 38.27 |
| VIT_05s0077g02110.t01 | Wine grape | cytosol | 37.89 | 30.77 |
| VIT_01s0011g05480.t01 | Wine grape | cytosol | 38.95 | 29.13 |
| VIT_19s0014g02850.t01 | Wine grape | cytosol | 37.89 | 26.67 |
| VIT_16s0022g00440.t01 | Wine grape | cytosol | 40.0 | 24.84 |
| VIT_11s0016g05000.t01 | Wine grape | cytosol, nucleus, plastid | 44.21 | 23.2 |
| VIT_17s0000g05380.t01 | Wine grape | cytosol | 41.05 | 21.08 |
Protein Annotations
| EntrezGene:100263495 | wikigene:100263495 | Gene3D:3.30.740.10 | MapMan:35.1 | ProteinID:CBI36123 | ProteinID:CBI36123.3 |
| UniProt:D7U0H7 | InterPro:DLC_sf | InterPro:Dynein_light_chain_typ-1/2 | EMBL:FN596494 | GO:GO:0003674 | GO:GO:0003774 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005868 | GO:GO:0005874 | GO:GO:0006810 | GO:GO:0007017 |
| GO:GO:0008092 | GO:GO:0008150 | GO:GO:0008574 | GO:GO:0009987 | GO:GO:0010970 | GO:GO:0016043 |
| GO:GO:0016787 | GO:GO:0030286 | GO:GO:0045505 | GO:GO:0051959 | GO:GO:0060271 | GO:GO:2000582 |
| InterPro:IPR037177 | EntrezGene:LOC100263495 | wikigene:LOC100263495 | PFAM:PF01221 | PANTHER:PTHR11886 | PANTHER:PTHR11886:SF47 |
| SMART:SM01375 | SUPFAM:SSF54648 | TIGR:TC61609 | TIGR:TC65196 | UniParc:UPI00015C888E | ArrayExpress:VIT_09s0002g04280 |
| EnsemblPlantsGene:VIT_09s0002g04280 | EnsemblPlants:VIT_09s0002g04280.t01 | unigene:Vvi.2532 | unigene:Vvi.25909 | RefSeq:XP_002284463 | RefSeq:XP_002284463.1 |
Description
Dynein light chain [Source:UniProtKB/TrEMBL;Acc:D7U0H7]
Coordinates
chr9:+:3924131..3925130
Molecular Weight (calculated)
10635.8 Da
IEP (calculated)
4.428
GRAVY (calculated)
0.227
Length
95 amino acids
Sequence
(BLAST)
(BLAST)
1: MLEGKALIED TDMPVKMQIQ AMACASQALD IYDVLDYKSI AAYIKKEFDM IYGTGWQCVV GSNFGCFFTH SKGTFIYFTL ETLNFLIFKG ASSSD
1: MLEGKAMVED SDMPVKMQMQ AMAFASQALD LFDVFDCKSI AGHIKKEFDE RYGSGWQCVV GSNFGCFFTH SKGTFIYFQL ETLKFLIFKG ASTP
Arabidopsis Description
At1g52250 [Source:UniProtKB/TrEMBL;Acc:Q9M810]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.