Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G110900.1 | Wheat | cytosol | 94.95 | 94.95 |
| TraesCS2B01G143000.1 | Wheat | cytosol | 94.95 | 94.95 |
| TraesCS2B01G427400.1 | Wheat | cytosol | 93.94 | 93.94 |
| TraesCS1D01G203800.1 | Wheat | cytosol | 92.93 | 92.93 |
| TraesCS2A01G245600.1 | Wheat | cytosol | 91.92 | 91.92 |
| TraesCS3B01G330900.1 | Wheat | cytosol | 90.91 | 90.91 |
| TraesCS7A01G284100.1 | Wheat | cytosol, plastid | 79.8 | 90.8 |
| HORVU3Hr1G073190.1 | Barley | cytosol | 88.89 | 84.62 |
| KXG33416 | Sorghum | cytosol | 78.79 | 83.87 |
| Zm00001d043386_P001 | Maize | cytosol | 77.78 | 82.8 |
| Bra014318.1-P | Field mustard | cytosol | 64.65 | 68.09 |
| Bra018957.1-P | Field mustard | cytosol | 64.65 | 68.09 |
| CDY02551 | Canola | cytosol | 64.65 | 68.09 |
| GSMUA_Achr7P25190_001 | Banana | cytosol | 63.64 | 67.74 |
| VIT_09s0002g04280.t01 | Wine grape | cytosol | 64.65 | 67.37 |
| Solyc12g044240.1.1 | Tomato | cytosol | 63.64 | 67.02 |
| AT1G52245.1 | Thale cress | cytosol | 63.64 | 67.02 |
| PGSC0003DMT400019607 | Potato | cytosol | 62.63 | 65.96 |
| KRH09878 | Soybean | cytosol | 62.63 | 65.26 |
| Solyc03g120690.2.1 | Tomato | cytosol | 61.62 | 64.89 |
| CDY30135 | Canola | cytosol | 60.61 | 64.52 |
| CDX97722 | Canola | cytosol | 60.61 | 64.52 |
| Bra027190.1-P | Field mustard | cytosol | 60.61 | 64.52 |
| AT3G16120.1 | Thale cress | cytosol | 60.61 | 64.52 |
| KRH23441 | Soybean | cytosol | 61.62 | 64.21 |
| PGSC0003DMT400006527 | Potato | cytosol | 60.61 | 63.83 |
| KRH60274 | Soybean | cytosol | 59.6 | 63.44 |
| KRH41561 | Soybean | cytosol | 59.6 | 63.44 |
| VIT_11s0016g03770.t01 | Wine grape | cytosol | 58.59 | 60.42 |
| CDY47528 | Canola | cytosol | 56.57 | 43.08 |
| TraesCS3B01G205000.1 | Wheat | cytosol | 32.32 | 22.7 |
| TraesCS6B01G325300.1 | Wheat | cytosol | 31.31 | 20.95 |
| TraesCS2B01G344700.1 | Wheat | cytosol | 34.34 | 19.43 |
| TraesCS6B01G224400.1 | Wheat | cytosol | 33.33 | 15.94 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G340700.1 | EnsemblPlantsGene:TraesCS5B01G340700 | Gene3D:3.30.740.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005856 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0030286 | InterPro:DLC_sf |
| InterPro:Dynein_light_chain_typ-1/2 | InterPro:IPR037177 | PANTHER:PTHR11886 | PANTHER:PTHR11886:SF47 | PFAM:PF01221 | SMART:SM01375 |
| SUPFAM:SSF54648 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:525548579..525549046
Molecular Weight (calculated)
11260.6 Da
IEP (calculated)
6.749
GRAVY (calculated)
-0.075
Length
99 amino acids
Sequence
(BLAST)
(BLAST)
1: MLEGKATVED TDMPTKMQLQ ATSAASRALD RFDVLDCRSI TTHIKKEFDM IHGPGWQCVV GCSFSCYFTH SKGSFIYFKF ELLRFLVFKG MADEQPMSC
1: MLEGKAMVED SDMPVKMQMQ AMAFASQALD LFDVFDCKSI AGHIKKEFDE RYGSGWQCVV GSNFGCFFTH SKGTFIYFQL ETLKFLIFKG ASTP
Arabidopsis Description
At1g52250 [Source:UniProtKB/TrEMBL;Acc:Q9M810]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.