Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_14s0068g01930.t01 | |
| VIT_18s0001g09130.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G15930.1 | VIT_18s0001g09130.t01 | AT3G01400.1 | 21798944 |
| AT4G15930.1 | VIT_14s0068g01930.t01 | AT5G14140.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012751.1-P | Field mustard | cytosol | 58.12 | 88.31 |
| GSMUA_Achr11P... | Banana | cytosol | 51.28 | 77.92 |
| GSMUA_Achr8P30040_001 | Banana | cytosol | 51.28 | 77.92 |
| KRH37076 | Soybean | cytosol | 70.94 | 70.34 |
| PGSC0003DMT400029467 | Potato | extracellular | 70.94 | 69.75 |
| KRH12076 | Soybean | cytosol | 72.65 | 69.67 |
| Solyc01g066590.2.1 | Tomato | cytosol, extracellular | 70.09 | 68.91 |
| CDY57865 | Canola | cytosol | 71.79 | 68.85 |
| CDY09728 | Canola | cytosol | 70.94 | 68.59 |
| Bra038059.1-P | Field mustard | cytosol | 72.65 | 68.55 |
| CDY24919 | Canola | cytosol | 72.65 | 68.55 |
| CDX90554 | Canola | cytosol | 70.09 | 67.77 |
| AT4G15930.1 | Thale cress | cytosol | 70.94 | 67.48 |
| Zm00001d008330_P001 | Maize | mitochondrion | 64.1 | 61.48 |
| Zm00001d040291_P001 | Maize | cytosol, mitochondrion | 65.81 | 60.16 |
| Os01t0256400-01 | Rice | cytosol, nucleus | 66.67 | 60.0 |
| EES00507 | Sorghum | cytosol | 66.67 | 60.0 |
| KRH12077 | Soybean | cytosol | 70.94 | 59.71 |
| TraesCS3A01G175300.1 | Wheat | cytosol | 65.81 | 54.61 |
| TraesCS3B01G205000.1 | Wheat | cytosol | 65.81 | 54.61 |
| TraesCS3D01G180700.1 | Wheat | cytosol | 65.81 | 54.61 |
| KRH37077 | Soybean | mitochondrion | 72.65 | 54.14 |
| GSMUA_AchrUn_... | Banana | cytosol | 35.9 | 47.19 |
| OQU83188 | Sorghum | plastid | 46.15 | 42.86 |
| VIT_09s0002g04280.t01 | Wine grape | cytosol | 30.77 | 37.89 |
| VIT_11s0016g03770.t01 | Wine grape | cytosol | 30.77 | 37.5 |
| VIT_19s0014g03710.t01 | Wine grape | cytosol | 34.19 | 36.7 |
| Os06t0492700-00 | Rice | endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 38.46 | 32.61 |
| VIT_08s0007g01270.t01 | Wine grape | cytosol | 26.5 | 30.69 |
| VIT_01s0011g05480.t01 | Wine grape | cytosol | 31.62 | 29.13 |
| VIT_19s0014g02850.t01 | Wine grape | cytosol | 33.33 | 28.89 |
| VIT_16s0022g00440.t01 | Wine grape | cytosol | 35.04 | 26.8 |
| VIT_11s0016g05000.t01 | Wine grape | cytosol, nucleus, plastid | 36.75 | 23.76 |
| VIT_17s0000g05380.t01 | Wine grape | cytosol | 35.04 | 22.16 |
Protein Annotations
| EntrezGene:100267077 | wikigene:100267077 | Gene3D:3.30.740.10 | MapMan:35.1 | UniProt:A5BC89 | EMBL:AM454255 |
| ProteinID:CAN81003 | ProteinID:CAN81003.1 | ProteinID:CCB48028 | ProteinID:CCB48028.1 | InterPro:DLC_sf | InterPro:Dynein_light_1/2_CS |
| InterPro:Dynein_light_chain_typ-1/2 | EMBL:FN595246 | GO:GO:0003674 | GO:GO:0003774 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 |
| GO:GO:0005868 | GO:GO:0005874 | GO:GO:0005875 | GO:GO:0006810 | GO:GO:0007017 | GO:GO:0008092 |
| GO:GO:0008150 | GO:GO:0008574 | GO:GO:0009987 | GO:GO:0010970 | GO:GO:0016043 | GO:GO:0016787 |
| GO:GO:0030286 | GO:GO:0045505 | GO:GO:0051959 | GO:GO:0060271 | GO:GO:2000582 | InterPro:IPR037177 |
| EntrezGene:LOC100267077 | wikigene:LOC100267077 | PFAM:PF01221 | ScanProsite:PS01239 | PANTHER:PTHR11886 | SMART:SM01375 |
| SUPFAM:SSF54648 | TIGR:TC58781 | UniParc:UPI00015243E4 | ArrayExpress:VIT_05s0077g02110 | EnsemblPlantsGene:VIT_05s0077g02110 | EnsemblPlants:VIT_05s0077g02110.t01 |
| unigene:Vvi.891 | RefSeq:XP_002270438 | RefSeq:XP_002270438.1 | : | : | : |
Description
Dynein light chain [Source:UniProtKB/TrEMBL;Acc:A5BC89]
Coordinates
chr5:-:1648224..1654998
Molecular Weight (calculated)
13175.7 Da
IEP (calculated)
9.013
GRAVY (calculated)
-0.446
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEDLKRNGA LALSLKQSSD DRKLSLAASA SKRVIIKSAD MKDDMQKEAI DIAIAASENH SVEKNIAEYI KKEFDKKHGP TWHCIVGRNF GSYVTHETNH
101: FVYFYLDQKA VLLFKSG
101: FVYFYLDQKA VLLFKSG
001: MSDGRRKKSV NGGAPAQTIL DDRRSSLPEV EASPPAGKRA VIKSADMKDD MQKEAIEIAI SAFEKYSVEK DIAENIKKEF DKKHGATWHC IVGRNFGSYV
101: THETNHFVYF YLDQKAVLLF KSG
101: THETNHFVYF YLDQKAVLLF KSG
Arabidopsis Description
At4g15930 [Source:UniProtKB/TrEMBL;Acc:Q84VW0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.