Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G205000.1 | Wheat | cytosol | 98.58 | 98.58 |
| TraesCS3A01G175300.1 | Wheat | cytosol | 98.58 | 98.58 |
| Bra012751.1-P | Field mustard | cytosol | 43.97 | 80.52 |
| Zm00001d040291_P001 | Maize | cytosol, mitochondrion | 73.05 | 80.47 |
| Os01t0256400-01 | Rice | cytosol, nucleus | 73.76 | 80.0 |
| EES00507 | Sorghum | cytosol | 73.05 | 79.23 |
| GSMUA_Achr11P... | Banana | cytosol | 42.55 | 77.92 |
| Zm00001d008330_P001 | Maize | mitochondrion | 67.38 | 77.87 |
| GSMUA_Achr8P30040_001 | Banana | cytosol | 41.84 | 76.62 |
| PGSC0003DMT400029467 | Potato | extracellular | 56.74 | 67.23 |
| Solyc01g066590.2.1 | Tomato | cytosol, extracellular | 56.03 | 66.39 |
| VIT_05s0077g02110.t01 | Wine grape | cytosol | 54.61 | 65.81 |
| KRH12076 | Soybean | cytosol | 56.03 | 64.75 |
| KRH37076 | Soybean | cytosol | 53.9 | 64.41 |
| CDY09728 | Canola | cytosol | 53.19 | 61.98 |
| AT4G15930.1 | Thale cress | cytosol | 53.9 | 61.79 |
| CDX90554 | Canola | cytosol | 52.48 | 61.16 |
| CDY57865 | Canola | cytosol | 52.48 | 60.66 |
| CDY24919 | Canola | cytosol | 53.19 | 60.48 |
| Bra038059.1-P | Field mustard | cytosol | 53.19 | 60.48 |
| OQU83188 | Sorghum | plastid | 48.23 | 53.97 |
| KRH12077 | Soybean | cytosol | 53.19 | 53.96 |
| KRH37077 | Soybean | mitochondrion | 55.32 | 49.68 |
| Os06t0492700-00 | Rice | endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 46.81 | 47.83 |
| GSMUA_AchrUn_... | Banana | cytosol | 29.79 | 47.19 |
| TraesCS1D01G203800.1 | Wheat | cytosol | 24.11 | 34.34 |
| TraesCS3D01G296300.1 | Wheat | cytosol | 24.11 | 34.34 |
| TraesCS7D01G056400.1 | Wheat | cytosol | 21.28 | 28.57 |
| TraesCS6D01G275800.1 | Wheat | cytosol | 26.95 | 26.76 |
| TraesCS2D01G325700.1 | Wheat | cytosol | 26.95 | 22.09 |
| TraesCS6D01G189000.1 | Wheat | cytosol | 26.24 | 17.79 |
| KRH40946 | Soybean | plastid | 8.51 | 10.34 |
Protein Annotations
| Gene3D:3.30.740.10 | MapMan:35.1 | InterPro:DLC_sf | InterPro:Dynein_light_1/2_CS | InterPro:Dynein_light_chain_typ-1/2 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 | GO:GO:0005875 | GO:GO:0007017 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0030286 | InterPro:IPR037177 | PFAM:PF01221 | ScanProsite:PS01239 | PANTHER:PTHR11886 |
| SMART:SM01375 | SUPFAM:SSF54648 | EnsemblPlantsGene:TraesCS3D01G180700 | EnsemblPlants:TraesCS3D01G180700.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr3D:+:162850720..162854875
Molecular Weight (calculated)
15404.2 Da
IEP (calculated)
8.448
GRAVY (calculated)
-0.381
Length
141 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDELKRGIA GAAAVAASHP APYAPRAPAD ADRRLAASAT ASLGSPPPAA ASPTAHKITL KSADMKEEMQ KEAFDISRVA FEKHTMEKDI AEYIKKEFDK
101: NHGPTWHCIV GRNFGSYVTH ETNYFVYFYI DSKAVLLFKS G
101: NHGPTWHCIV GRNFGSYVTH ETNYFVYFYI DSKAVLLFKS G
001: MSDGRRKKSV NGGAPAQTIL DDRRSSLPEV EASPPAGKRA VIKSADMKDD MQKEAIEIAI SAFEKYSVEK DIAENIKKEF DKKHGATWHC IVGRNFGSYV
101: THETNHFVYF YLDQKAVLLF KSG
101: THETNHFVYF YLDQKAVLLF KSG
Arabidopsis Description
At4g15930 [Source:UniProtKB/TrEMBL;Acc:Q84VW0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.