Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012751.1-P | Field mustard | cytosol | 63.64 | 100.0 |
| CDY09728 | Canola | cytosol | 97.52 | 97.52 |
| CDY57865 | Canola | cytosol | 87.6 | 86.89 |
| CDY24919 | Canola | cytosol | 86.78 | 84.68 |
| GSMUA_Achr8P30040_001 | Banana | cytosol | 48.76 | 76.62 |
| GSMUA_Achr11P... | Banana | cytosol | 47.93 | 75.32 |
| VIT_05s0077g02110.t01 | Wine grape | cytosol | 67.77 | 70.09 |
| Solyc01g066590.2.1 | Tomato | cytosol, extracellular | 63.64 | 64.71 |
| PGSC0003DMT400029467 | Potato | extracellular | 62.81 | 63.87 |
| EES00507 | Sorghum | cytosol | 63.64 | 59.23 |
| Zm00001d008330_P001 | Maize | mitochondrion | 58.68 | 58.2 |
| Zm00001d040291_P001 | Maize | cytosol, mitochondrion | 61.16 | 57.81 |
| Os01t0256400-01 | Rice | cytosol, nucleus | 61.98 | 57.69 |
| TraesCS3A01G175300.1 | Wheat | cytosol | 61.98 | 53.19 |
| TraesCS3B01G205000.1 | Wheat | cytosol | 61.16 | 52.48 |
| TraesCS3D01G180700.1 | Wheat | cytosol | 61.16 | 52.48 |
| OQU83188 | Sorghum | plastid | 43.8 | 42.06 |
| GSMUA_AchrUn_... | Banana | cytosol | 29.75 | 40.45 |
| CDY02551 | Canola | cytosol | 28.1 | 36.17 |
| CDY30135 | Canola | cytosol | 27.27 | 35.48 |
| CDX97722 | Canola | cytosol | 27.27 | 35.48 |
| CDY29301 | Canola | cytosol | 27.27 | 32.67 |
| CDX89255 | Canola | cytosol | 27.27 | 32.67 |
| Os06t0492700-00 | Rice | endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 37.19 | 32.61 |
| CDY21425 | Canola | cytosol | 30.58 | 28.46 |
| CDY04736 | Canola | cytosol | 30.58 | 28.46 |
| CDY41457 | Canola | cytosol | 29.75 | 27.69 |
| CDX91705 | Canola | cytosol | 29.75 | 27.69 |
| CDY25775 | Canola | cytosol | 29.75 | 26.28 |
| CDY12479 | Canola | cytosol | 29.75 | 26.28 |
| CDY47528 | Canola | cytosol | 27.27 | 25.38 |
| CDY45106 | Canola | nucleus | 38.02 | 21.9 |
| CDX88858 | Canola | nucleus, plastid | 37.19 | 21.53 |
| CDX70914 | Canola | nucleus | 37.19 | 21.33 |
| KRH40946 | Soybean | plastid | 9.92 | 10.34 |
Protein Annotations
| Gene3D:3.30.740.10 | MapMan:35.1 | GO:A0A078DQ50 | EnsemblPlants:CDX90554 | ProteinID:CDX90554 | ProteinID:CDX90554.1 |
| InterPro:DLC_sf | InterPro:Dynein_light_1/2_CS | InterPro:Dynein_light_chain_typ-1/2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005856 | GO:GO:0005875 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0030286 |
| EnsemblPlantsGene:GSBRNA2T00151188001 | InterPro:IPR037177 | PFAM:PF01221 | ScanProsite:PS01239 | PANTHER:PTHR11886 | SMART:SM01375 |
| SUPFAM:SSF54648 | UniParc:UPI0004EEADE6 | : | : | : | : |
Description
BnaA03g42270D
Coordinates
chrLK031863:-:824038..825019
Molecular Weight (calculated)
13626.1 Da
IEP (calculated)
7.670
GRAVY (calculated)
-0.638
Length
121 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEGRRKKSV NGGGAPTQTN PDDRRSTLPE AEAAGKRAVI MSADMKEDMQ KEAIEIAITA FEKYSVEKEI AENIKKEFDK VHGPTWHCIV GRNFGSYVTH
101: ETNHFVYFYL DQKAVLLFKS G
101: ETNHFVYFYL DQKAVLLFKS G
001: MSDGRRKKSV NGGAPAQTIL DDRRSSLPEV EASPPAGKRA VIKSADMKDD MQKEAIEIAI SAFEKYSVEK DIAENIKKEF DKKHGATWHC IVGRNFGSYV
101: THETNHFVYF YLDQKAVLLF KSG
101: THETNHFVYF YLDQKAVLLF KSG
Arabidopsis Description
At4g15930 [Source:UniProtKB/TrEMBL;Acc:Q84VW0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.