CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020085.1-P	Field mustard	cytosol, mitochondrion, plastid	44.76	97.92
CDX70914	Canola	nucleus	88.1	87.68
CDX88858	Canola	nucleus, plastid	85.24	85.65
KRH40947	Soybean	cytosol	19.52	80.39
AT5G20110.1	Thale cress	cytosol	77.62	77.99
VIT_11s0016g05000.t01	Wine grape	cytosol, nucleus, plastid	43.81	50.83
Solyc12g006630.1.1	Tomato	cytosol	47.62	44.64
CDX97722	Canola	cytosol	19.05	43.01
CDY30135	Canola	cytosol	19.05	43.01
CDY02551	Canola	cytosol	19.05	42.55
PGSC0003DMT400053284	Potato	cytosol	46.67	42.42
CDY04736	Canola	cytosol	26.19	42.31
CDY21425	Canola	cytosol	26.19	42.31
CDY41457	Canola	cytosol	26.19	42.31
CDX91705	Canola	cytosol	25.71	41.54
KRH20287	Soybean	cytosol	46.19	39.75
CDX89255	Canola	cytosol	19.05	39.6
CDY29301	Canola	cytosol	19.05	39.6
KRH03712	Soybean	cytosol	46.19	39.59
CDY12479	Canola	cytosol	25.71	39.42
CDY25775	Canola	cytosol	25.71	39.42
CDY09728	Canola	cytosol	21.9	38.02
CDX90554	Canola	cytosol	21.9	38.02
CDY57865	Canola	cytosol	20.95	36.07
CDY24919	Canola	cytosol	20.95	35.48
KRH33092	Soybean	plastid	23.33	32.89
CDY47528	Canola	cytosol	17.14	27.69

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.1	GO:A0A078I5E3	UniProt:A0A078I5E3	EnsemblPlants:CDY45106	ProteinID:CDY45106
ProteinID:CDY45106.1	InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0030286	EnsemblPlantsGene:GSBRNA2T00081390001
InterPro:IPR037177	PFAM:PF01221	PANTHER:PTHR11886	PANTHER:PTHR11886:SF51	SMART:SM01375	SUPFAM:SSF54648
UniParc:UPI0004EEF522	SEG:seg	:	:	:	:

Description

BnaA02g04700DBnaA02g04700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I5E3]

Coordinates

chrLK032613:+:206037..208138

Molecular Weight (calculated)

23436.2 Da

IEP (calculated)

10.361

GRAVY (calculated)

-0.522

Length

210 amino acids

Sequence
(BLAST)

001: MNMATEEKPK KKKSLMSFYK FSTTTSKQSL INPKFKPNKD SIPPSSLSQE DASKPIVPRP NKMPNHLVRD IFELETSSKE RKKGGDGGGA AEEGRKSVSH
101: VERDTTARIA AAAEMLTVRI LAADMPGFMQ AHAFRCARTT LDSLEKFSSK HMAFNLKKEF DKGYGPAWHC IVGSSFGSFV THSTGCFLYF SMDKLYILLF
201: KTKVRSTSPH

Best Arabidopsis Sequence Match ( AT5G20110.1 )
(BLAST)

001: MNEERPKKSK KKSLMNFYKF SITSSKHSLI NPKSKPKIPI STPSISQQEV EEKPIVQSNK SHQNHVMRDI FELETTCSRN NERKKGGGAA EEGRKSVSHV
101: ERDTAARIEA AAEMLTVRIL AADMPGFMQA HAFRCARMTL DSLEKFSSKH MAFNLKKEFD KGYGPAWHCI VGSSFGSFVT HSTGCFIYFS MDKLYVLLFK
201: TKVRPASPH

Arabidopsis Description

At5g20110 [Source:UniProtKB/TrEMBL;Acc:Q6NM36]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.