CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40947	Soybean	cytosol	20.9	100.0
KRH03712	Soybean	cytosol	95.08	94.69
Bra020085.1-P	Field mustard	cytosol, mitochondrion, plastid	29.1	73.96
VIT_11s0016g05000.t01	Wine grape	cytosol, nucleus, plastid	45.49	61.33
KRH33092	Soybean	plastid	30.74	50.34
Solyc12g006630.1.1	Tomato	cytosol	45.08	49.11
CDX70914	Canola	nucleus	40.98	47.39
Bra006541.1-P	Field mustard	nucleus	40.57	47.37
CDX88858	Canola	nucleus, plastid	40.57	47.37
PGSC0003DMT400053284	Potato	cytosol	44.26	46.75
CDY45106	Canola	nucleus	39.75	46.19
AT5G20110.1	Thale cress	cytosol	39.34	45.93
KRH27167	Soybean	cytosol	17.62	45.74
KRH60274	Soybean	cytosol	17.21	45.16
KRH09878	Soybean	cytosol	17.21	44.21
KRH23441	Soybean	cytosol	17.21	44.21
KRH41561	Soybean	cytosol	16.8	44.09
KRH08469	Soybean	cytosol	22.54	42.31
KRH70126	Soybean	cytosol	22.95	42.11
KRH55664	Soybean	cytosol, mitochondrion, peroxisome	18.44	41.28
KRH60372	Soybean	cytosol	22.13	40.6
KRH41675	Soybean	cytosol	22.13	40.6
KRH25852	Soybean	cytosol	9.43	38.98
KRH37076	Soybean	cytosol	18.03	37.29
KRH49195	Soybean	cytosol	16.8	36.61
KRH12076	Soybean	cytosol	17.62	35.25
KRH27230	Soybean	cytosol	20.49	32.89
KRH12077	Soybean	cytosol	18.03	31.65
KRH22104	Soybean	cytosol, plastid	19.26	29.94
KRH03396	Soybean	cytosol	30.33	28.57
KRH56986	Soybean	cytosol	29.92	27.65
KRH37077	Soybean	mitochondrion	17.62	27.39
KRH40946	Soybean	plastid	6.15	12.93

Protein Annotations

EntrezGene:100818075	Gene3D:3.30.740.10	MapMan:35.2	EMBL:ACUP02008253	InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2
EnsemblPlantsGene:GLYMA_13G168300	GO:GO:0003674	GO:GO:0003774	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005868
GO:GO:0005874	GO:GO:0006810	GO:GO:0007017	GO:GO:0008092	GO:GO:0008150	GO:GO:0008574
GO:GO:0009987	GO:GO:0010970	GO:GO:0016043	GO:GO:0016787	GO:GO:0030286	GO:GO:0045505
GO:GO:0051959	GO:GO:0060271	GO:GO:2000582	InterPro:IPR037177	UniProt:K7M085	EnsemblPlants:KRH20287
ProteinID:KRH20287	ProteinID:KRH20287.1	PFAM:PF01221	PANTHER:PTHR11886	PANTHER:PTHR11886:SF51	SMART:SM01375
SUPFAM:SSF54648	UniParc:UPI000296A4C4	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:28265646..28268213

Molecular Weight (calculated)

27487.1 Da

IEP (calculated)

10.196

GRAVY (calculated)

-0.353

Length

244 amino acids

Sequence
(BLAST)

001: MANQDKQHKR AFMYIYKGGT VNQRKKELEH GVGQDKKSKS RSWLHRISRT RIFNDGHRDL DIGARGEGEF VEARKSMSCL ELGSPAGGYV EGRKSVSFIE
101: AAASPAAIGS IVEERRKSVS HIEKNFAVAG MVEARKSVSH IETLSSVIAY LQVKVLVSDM PSFMQVHAFR CARRTYDSLE KFSAKHIAHN IKKEFDKAYG
201: PVWHCIVGSN FGSFVTHSTG CFLYFSMENL YILLFKTKVK KALD

Best Arabidopsis Sequence Match ( AT5G20110.1 )
(BLAST)

001: MNEERPKKSK KKSLMNFYKF SITSSKHSLI NPKSKPKIPI STPSISQQEV EEKPIVQSNK SHQNHVMRDI FELETTCSRN NERKKGGGAA EEGRKSVSHV
101: ERDTAARIEA AAEMLTVRIL AADMPGFMQA HAFRCARMTL DSLEKFSSKH MAFNLKKEFD KGYGPAWHCI VGSSFGSFVT HSTGCFIYFS MDKLYVLLFK
201: TKVRPASPH

Arabidopsis Description

At5g20110 [Source:UniProtKB/TrEMBL;Acc:Q6NM36]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.