Factsheet for Bra006541.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88858	Canola	nucleus, plastid	99.52	99.52
CDX70914	Canola	nucleus	98.09	97.16
Bra020085.1-P	Field mustard	cytosol, mitochondrion, plastid	44.02	95.83
AT5G20110.1	Thale cress	cytosol	81.34	81.34
KRH40947	Soybean	cytosol	19.62	80.39
Bra012751.1-P	Field mustard	cytosol	18.66	50.65
VIT_11s0016g05000.t01	Wine grape	cytosol, nucleus, plastid	43.54	50.28
Bra027190.1-P	Field mustard	cytosol	19.62	44.09
Bra014318.1-P	Field mustard	cytosol	19.62	43.62
Bra018957.1-P	Field mustard	cytosol	19.62	43.62
Bra024572.1-P	Field mustard	cytosol	26.79	43.08
Solyc12g006630.1.1	Tomato	cytosol	45.93	42.86
Bra012367.1-P	Field mustard	cytosol	26.32	42.31
PGSC0003DMT400053284	Potato	cytosol	44.98	40.69
Bra026356.1-P	Field mustard	cytosol	19.62	40.59
KRH20287	Soybean	cytosol	47.37	40.57
KRH03712	Soybean	cytosol	47.37	40.41
Bra038059.1-P	Field mustard	cytosol	21.05	35.48
KRH33092	Soybean	plastid	23.45	32.89

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.2	EnsemblPlantsGene:Bra006541	EnsemblPlants:Bra006541.1	EnsemblPlants:Bra006541.1-P	InterPro:DLC_sf
InterPro:Dynein_light_chain_typ-1/2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0007017
GO:GO:0008150	GO:GO:0009987	GO:GO:0030286	InterPro:IPR037177	UniProt:M4CQQ0	PFAM:PF01221
PANTHER:PTHR11886	PANTHER:PTHR11886:SF51	SMART:SM01375	SUPFAM:SSF54648	UniParc:UPI000253FFCD	SEG:seg

Description

AT5G20110 (E=2e-082) | dynein light chain, putative

Coordinates

chrA03:-:3968812..3970739

Molecular Weight (calculated)

23423.3 Da

IEP (calculated)

10.501

GRAVY (calculated)

-0.506

Length

209 amino acids

Sequence
(BLAST)

001: MNMANEEKPK KKKSLMNFYK FSTTTSKKSL IKPKSTPNKV QIPPSSVYQE EVSKSIVVQS SKTQNHLRRD IFELKTTSNE RKKGGAGGAA EEGRKSVSHV
101: ERDTEARIAA AAEMLTVRIL AADMPGFMQA HAFRCARTTL DSLEKFSSKH MAFNLKKEFD KGYGPAWHCI VGSSFGSFVT HSTGCFIYFS MDKLYILLFK
201: TKVRPASPH

Best Arabidopsis Sequence Match ( AT5G20110.1 )
(BLAST)

001: MNEERPKKSK KKSLMNFYKF SITSSKHSLI NPKSKPKIPI STPSISQQEV EEKPIVQSNK SHQNHVMRDI FELETTCSRN NERKKGGGAA EEGRKSVSHV
101: ERDTAARIEA AAEMLTVRIL AADMPGFMQA HAFRCARMTL DSLEKFSSKH MAFNLKKEFD KGYGPAWHCI VGSSFGSFVT HSTGCFIYFS MDKLYVLLFK
201: TKVRPASPH

Arabidopsis Description

At5g20110 [Source:UniProtKB/TrEMBL;Acc:Q6NM36]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.