CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020085.1-P	Field mustard	cytosol, mitochondrion, plastid	80.39	42.71
KRH33092	Soybean	plastid	100.0	34.23
KRH27167	Soybean	cytosol	52.94	28.72
KRH60274	Soybean	cytosol	49.02	26.88
KRH55664	Soybean	cytosol, mitochondrion, peroxisome	56.86	26.61
KRH09878	Soybean	cytosol	49.02	26.32
KRH23441	Soybean	cytosol	49.02	26.32
KRH41561	Soybean	cytosol	47.06	25.81
KRH08469	Soybean	cytosol	64.71	25.38
KRH70126	Soybean	cytosol	64.71	24.81
KRH60372	Soybean	cytosol	60.78	23.31
KRH41675	Soybean	cytosol	60.78	23.31
VIT_11s0016g05000.t01	Wine grape	cytosol, nucleus, plastid	82.35	23.2
KRH37076	Soybean	cytosol	52.94	22.88
KRH12076	Soybean	cytosol	52.94	22.13
KRH49195	Soybean	cytosol	47.06	21.43
KRH20287	Soybean	cytosol	100.0	20.9
KRH03712	Soybean	cytosol	100.0	20.82
Bra006541.1-P	Field mustard	nucleus	80.39	19.62
CDX88858	Canola	nucleus, plastid	80.39	19.62
CDY45106	Canola	nucleus	80.39	19.52
CDX70914	Canola	nucleus	80.39	19.43
KRH12077	Soybean	cytosol	52.94	19.42
AT5G20110.1	Thale cress	cytosol	78.43	19.14
Solyc12g006630.1.1	Tomato	cytosol	78.43	17.86
KRH27230	Soybean	cytosol	52.94	17.76
PGSC0003DMT400053284	Potato	cytosol	78.43	17.32
KRH37077	Soybean	mitochondrion	52.94	17.2
KRH22104	Soybean	cytosol, plastid	52.94	17.2
KRH03396	Soybean	cytosol	74.51	14.67
KRH56986	Soybean	cytosol	74.51	14.39
KRH25852	Soybean	cytosol	13.73	11.86
KRH40946	Soybean	plastid	21.57	9.48

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.2	UniProt:A0A0R0IKP8	EMBL:ACUP02004740	InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2
EnsemblPlantsGene:GLYMA_08G0014001	GO:GO:0003674	GO:GO:0003774	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016787	GO:GO:0030286	InterPro:IPR037177	EnsemblPlants:KRH40947	ProteinID:KRH40947
ProteinID:KRH40947.1	PFAM:PF01221	PANTHER:PTHR11886	PANTHER:PTHR11886:SF51	SMART:SM01375	SUPFAM:SSF54648
TMHMM:TMhelix	UniParc:UPI0006EDF345	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:99192..99732

Molecular Weight (calculated)

5854.1 Da

IEP (calculated)

8.222

GRAVY (calculated)

0.233

Length

51 amino acids

Sequence
(BLAST)

1: EFDKAYGPVW HCIVGSNFGS FVTHSTGCFL YFSMENLYIL LFKTKVKKAL D

Best Arabidopsis Sequence Match ( AT5G20110.1 )
(BLAST)

001: MNEERPKKSK KKSLMNFYKF SITSSKHSLI NPKSKPKIPI STPSISQQEV EEKPIVQSNK SHQNHVMRDI FELETTCSRN NERKKGGGAA EEGRKSVSHV
101: ERDTAARIEA AAEMLTVRIL AADMPGFMQA HAFRCARMTL DSLEKFSSKH MAFNLKKEFD KGYGPAWHCI VGSSFGSFVT HSTGCFIYFS MDKLYVLLFK
201: TKVRPASPH

Arabidopsis Description

At5g20110 [Source:UniProtKB/TrEMBL;Acc:Q6NM36]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.