CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22104	Soybean	cytosol, plastid	90.79	87.9
VIT_19s0014g02850.t01	Wine grape	cytosol	49.34	55.56
KRH40947	Soybean	cytosol	17.76	52.94
Solyc07g063180.2.1	Tomato	cytosol	46.05	47.62
PGSC0003DMT400032411	Potato	cytosol, mitochondrion, nucleus, plastid	44.74	46.26
KRH27167	Soybean	cytosol	25.66	41.49
KRH60372	Soybean	cytosol	35.53	40.6
KRH41675	Soybean	cytosol	35.53	40.6
KRH08469	Soybean	cytosol	33.55	39.23
KRH23441	Soybean	cytosol	24.34	38.95
KRH09878	Soybean	cytosol	24.34	38.95
KRH41561	Soybean	cytosol	23.68	38.71
KRH60274	Soybean	cytosol	23.68	38.71
KRH70126	Soybean	cytosol	32.24	36.84
KRH37076	Soybean	cytosol	25.66	33.05
KRH25852	Soybean	cytosol	12.5	32.2
KRH55664	Soybean	cytosol, mitochondrion, peroxisome	23.03	32.11
KRH12076	Soybean	cytosol	25.0	31.15
KRH12077	Soybean	cytosol	25.66	28.06
KRH49195	Soybean	cytosol	20.39	27.68
KRH37077	Soybean	mitochondrion	25.0	24.2
KRH20287	Soybean	cytosol	32.89	20.49
KRH03712	Soybean	cytosol	32.89	20.41
KRH33092	Soybean	plastid	19.08	19.46
KRH56986	Soybean	cytosol	33.55	19.32
KRH03396	Soybean	cytosol	32.89	19.3
KRH40946	Soybean	plastid	9.21	12.07

Protein Annotations

EntrezGene:100790593	Gene3D:3.30.740.10	MapMan:35.2	EMBL:ACUP02007788	InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2
EnsemblPlantsGene:GLYMA_12G223500	GO:GO:0003674	GO:GO:0003774	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005868
GO:GO:0005874	GO:GO:0006810	GO:GO:0007017	GO:GO:0008092	GO:GO:0008150	GO:GO:0008574
GO:GO:0009987	GO:GO:0010970	GO:GO:0016043	GO:GO:0016787	GO:GO:0030286	GO:GO:0045505
GO:GO:0051959	GO:GO:0060271	GO:GO:2000582	UniProt:I1LV00	InterPro:IPR037177	EnsemblPlants:KRH27230
ProteinID:KRH27230	ProteinID:KRH27230.1	PFAM:PF01221	PANTHER:PTHR11886	PANTHER:PTHR11886:SF49	SMART:SM01375
SUPFAM:SSF54648	UniParc:UPI000233CA37	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:38324839..38326234

Molecular Weight (calculated)

17003.6 Da

IEP (calculated)

10.323

GRAVY (calculated)

-0.379

Length

152 amino acids

Sequence
(BLAST)

001: MLSITMEEQQ EPTKLIHGSK EKHNKAMHMH TTPNPNPSQT IMRLASLAIS SNVRLKSSDM PSHMQEHALR HTRSLFPLHH PPSPKPSNTL IARALKKEFD
101: SKYGLAWHCV IGKSFGSFVS HTGGGFIYFS IDSLSVLLFK TEVHLVTQPP PT

Best Arabidopsis Sequence Match ( AT1G23220.1 )
(BLAST)

001: MEGVELELER RSKFLNSLIQ KKKAKEQQDQ KDEFNVRVRA SDMPLPQQNR AFSLSREILN ATPGKADNKR LAHALKKDFD SAYGPAWHCI VGTSFGSYVT
101: HSTGGFLYFQ IDKVYVLLFK TAVEPLDQK

Arabidopsis Description

Dynein light chain type 1 family protein [Source:UniProtKB/TrEMBL;Acc:Q9LR39]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.