Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 2
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g063180.2.1 | Tomato | cytosol | 95.92 | 95.92 |
| VIT_19s0014g02850.t01 | Wine grape | cytosol | 52.38 | 57.04 |
| KRH27230 | Soybean | cytosol | 46.26 | 44.74 |
| KRH22104 | Soybean | cytosol, plastid | 45.58 | 42.68 |
| PGSC0003DMT400006527 | Potato | cytosol | 27.21 | 42.55 |
| PGSC0003DMT400081918 | Potato | cytosol | 36.73 | 41.54 |
| PGSC0003DMT400019607 | Potato | cytosol | 26.53 | 41.49 |
| PGSC0003DMT400049549 | Potato | cytosol | 29.25 | 35.54 |
| PGSC0003DMT400029467 | Potato | extracellular | 27.21 | 33.61 |
| PGSC0003DMT400053284 | Potato | cytosol | 36.05 | 22.94 |
| PGSC0003DMT400083122 | Potato | cytosol | 37.41 | 20.15 |
| PGSC0003DMT400062841 | Potato | plastid | 35.37 | 19.05 |
Protein Annotations
| EntrezGene:102588356 | Gene3D:3.30.740.10 | MapMan:35.2 | InterPro:DLC_sf | InterPro:Dynein_light_chain_typ-1/2 | GO:GO:0003674 |
| GO:GO:0003774 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0030286 | InterPro:IPR037177 | UniProt:M1AXE0 | PFAM:PF01221 | EnsemblPlantsGene:PGSC0003DMG400012449 | PGSC:PGSC0003DMG400012449 |
| EnsemblPlants:PGSC0003DMT400032411 | PANTHER:PTHR11886 | PANTHER:PTHR11886:SF49 | SMART:SM01375 | SUPFAM:SSF54648 | UniParc:UPI000295AC64 |
| RefSeq:XP_006348247.1 | SEG:seg | : | : | : | : |
Description
Axonemal dynein light chain [Source:PGSC_GENE;Acc:PGSC0003DMG400012449]
Coordinates
chr7:-:53252867..53254333
Molecular Weight (calculated)
16427.8 Da
IEP (calculated)
10.166
GRAVY (calculated)
-0.129
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MPMHSSSSSL SRRQKPNNNN ENVISKSMSA EEEVKLAALA ITLNIRLRSA DMPFAMQAYA LRYARTLLLQ PANHRPNPSL LARYLKKEFD SMYGPAWHCV
101: VGKSFGSFVT HSPGGFVYFS LESFSFLLFK TEVQLITEAV VPTPAAR
101: VGKSFGSFVT HSPGGFVYFS LESFSFLLFK TEVQLITEAV VPTPAAR
001: MNEERPKKSK KKSLMNFYKF SITSSKHSLI NPKSKPKIPI STPSISQQEV EEKPIVQSNK SHQNHVMRDI FELETTCSRN NERKKGGGAA EEGRKSVSHV
101: ERDTAARIEA AAEMLTVRIL AADMPGFMQA HAFRCARMTL DSLEKFSSKH MAFNLKKEFD KGYGPAWHCI VGSSFGSFVT HSTGCFIYFS MDKLYVLLFK
201: TKVRPASPH
101: ERDTAARIEA AAEMLTVRIL AADMPGFMQA HAFRCARMTL DSLEKFSSKH MAFNLKKEFD KGYGPAWHCI VGSSFGSFVT HSTGCFIYFS MDKLYVLLFK
201: TKVRPASPH
Arabidopsis Description
At5g20110 [Source:UniProtKB/TrEMBL;Acc:Q6NM36]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.