Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G325300.1 | Wheat | cytosol | 98.59 | 94.59 |
| TraesCS6A01G295200.1 | Wheat | cytosol | 95.77 | 91.89 |
| Zm00001d017947_P001 | Maize | cytosol, mitochondrion | 86.62 | 79.87 |
| Zm00001d051789_P002 | Maize | cytosol | 86.62 | 79.35 |
| EES05573 | Sorghum | cytosol | 85.92 | 77.22 |
| Os02t0733001-00 | Rice | cytosol, mitochondrion, peroxisome | 85.21 | 75.62 |
| VIT_01s0011g05480.t01 | Wine grape | cytosol | 54.93 | 61.42 |
| KRH70126 | Soybean | cytosol | 53.52 | 57.14 |
| KRH08469 | Soybean | cytosol | 52.11 | 56.92 |
| GSMUA_Achr1P20660_001 | Banana | cytosol | 54.23 | 56.62 |
| KRH41675 | Soybean | cytosol | 52.82 | 56.39 |
| KRH60372 | Soybean | cytosol | 52.11 | 55.64 |
| PGSC0003DMT400081918 | Potato | cytosol | 50.7 | 55.38 |
| Solyc01g005460.2.1 | Tomato | cytosol | 49.3 | 53.85 |
| CDY41457 | Canola | cytosol | 48.59 | 53.08 |
| GSMUA_Achr7P12500_001 | Banana | cytosol | 53.52 | 52.41 |
| Bra012367.1-P | Field mustard | cytosol | 47.89 | 52.31 |
| CDX91705 | Canola | cytosol | 47.89 | 52.31 |
| AT1G23220.1 | Thale cress | cytosol | 47.18 | 51.94 |
| CDY21425 | Canola | cytosol | 46.48 | 50.77 |
| CDY04736 | Canola | cytosol | 46.48 | 50.77 |
| Bra024572.1-P | Field mustard | cytosol | 46.48 | 50.77 |
| GSMUA_Achr9P27210_001 | Banana | nucleus | 53.52 | 50.0 |
| CDY25775 | Canola | cytosol | 47.89 | 49.63 |
| CDY12479 | Canola | cytosol | 47.89 | 49.63 |
| TraesCS2D01G325700.1 | Wheat | cytosol | 59.15 | 48.84 |
| TraesCS6D01G189000.1 | Wheat | cytosol | 58.45 | 39.9 |
| TraesCS3D01G296300.1 | Wheat | cytosol | 25.35 | 36.36 |
| TraesCS1D01G203800.1 | Wheat | cytosol | 24.65 | 35.35 |
| TraesCS7D01G056400.1 | Wheat | cytosol | 23.24 | 31.43 |
| TraesCS3D01G180700.1 | Wheat | cytosol | 26.76 | 26.95 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G275800.1 | EnsemblPlantsGene:TraesCS6D01G275800 | Gene3D:3.30.740.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005856 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0030286 | InterPro:DLC_sf |
| InterPro:Dynein_light_chain_typ-1/2 | InterPro:IPR037177 | PANTHER:PTHR11886 | PANTHER:PTHR11886:SF39 | PFAM:PF01221 | SEG:seg |
| SMART:SM01375 | SUPFAM:SSF54648 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr6D:-:384431640..384432923
Molecular Weight (calculated)
15482.7 Da
IEP (calculated)
10.039
GRAVY (calculated)
-0.287
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MREQGRRGGV IRSLLGVARL AEDDGAGAEE GGSKKEDGGG AERKAVVRVV AADMPPALQR RAFRCARDEL AGMPHFPRRL EPKRLALALK KEFDTAYGAA
101: WHCIVGTSFG SYVTHAKGGF LYFSVDKVYI LLFRTAVEPP PH
101: WHCIVGTSFG SYVTHAKGGF LYFSVDKVYI LLFRTAVEPP PH
001: MSDGRRKKSV NGGAPAQTIL DDRRSSLPEV EASPPAGKRA VIKSADMKDD MQKEAIEIAI SAFEKYSVEK DIAENIKKEF DKKHGATWHC IVGRNFGSYV
101: THETNHFVYF YLDQKAVLLF KSG
101: THETNHFVYF YLDQKAVLLF KSG
Arabidopsis Description
At4g15930 [Source:UniProtKB/TrEMBL;Acc:Q84VW0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.