CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28904	Soybean	cytosol	92.42	92.42
KRH07920	Soybean	cytosol	82.99	82.99
KRH69678	Soybean	nucleus	81.89	81.28
KRH07807	Soybean	cytosol, mitochondrion, nucleus	9.8	79.1
Solyc02g082800.2.1	Tomato	plastid	66.17	64.74
PGSC0003DMT400003987	Potato	cytosol	65.43	64.13
Solyc03g032160.2.1	Tomato	plastid	64.69	62.84
VIT_04s0210g00220.t01	Wine grape	cytosol, nucleus	58.04	60.85
PGSC0003DMT400048093	Potato	extracellular	8.87	59.26
GSMUA_Achr5P11110_001	Banana	cytosol	57.49	58.35
TraesCS4B01G325900.2	Wheat	cytosol	56.93	57.89
Os03t0131300-01	Rice	plasma membrane	56.56	57.3
TraesCS1D01G206500.1	Wheat	cytosol	58.96	56.56
GSMUA_Achr3P00530_001	Banana	cytosol	57.67	56.42
EER92919	Sorghum	cytosol	56.01	56.32
GSMUA_Achr1P14990_001	Banana	cytosol	57.67	56.32
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	47.32	56.26
HORVU4Hr1G082050.15	Barley	cytosol	55.27	55.99
TraesCS1B01G217000.1	Wheat	cytosol	58.78	55.99
Zm00001d048343_P001	Maize	cytosol	55.08	55.91
TraesCS1A01G203000.1	Wheat	cytosol	58.41	55.63
Zm00001d027514_P002	Maize	cytosol	54.71	55.22
TraesCS5A01G498100.1	Wheat	cytosol	57.49	54.75
Os10t0542200-01	Rice	plasma membrane, plastid	57.67	54.26
TraesCS4D01G322800.1	Wheat	cytosol	56.93	54.23
EER92003	Sorghum	cytosol	58.04	54.14
Zm00001d047373_P001	Maize	cytosol	57.3	53.82
GSMUA_Achr7P04060_001	Banana	cytosol	53.23	52.84
HORVU1Hr1G052260.2	Barley	cytosol	55.27	52.36
Zm00001d029782_P004	Maize	cytosol	56.75	51.77
PGSC0003DMT400045106	Potato	cytosol	43.99	51.29
Solyc02g060580.1.1	Tomato	cytosol	26.8	47.39
Solyc02g060600.1.1	Tomato	cytosol	23.29	44.84
Solyc02g061670.1.1	Tomato	cytosol	28.28	43.59
Solyc02g060590.1.1	Tomato	cytosol	10.72	43.28
Solyc02g061720.1.1	Tomato	cytosol	26.99	43.2
Solyc02g061680.1.1	Tomato	cytosol	38.26	42.86
Solyc02g061640.1.1	Tomato	cytosol	10.17	41.04
Solyc02g061710.1.1	Tomato	nucleus	18.3	40.41
Solyc02g061610.1.1	Tomato	cytosol	37.15	40.36
GSMUA_Achr1P02760_001	Banana	cytosol	7.76	32.56
Solyc02g060570.1.1	Tomato	cytosol	39.0	29.76

Protein Annotations

Gene3D:1.10.8.10	EntrezGene:100797539	MapMan:19.3.4.6	Gene3D:3.10.20.90	EMBL:ACUP02000620	EnsemblPlantsGene:GLYMA_01G159500
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1J8D4	InterPro:IPR000626	InterPro:IPR015940
EnsemblPlants:KRH76549	ProteinID:KRH76549	ProteinID:KRH76549.1	PFAM:PF00240	PFAM:PF00627	PFscan:PS50030
PFscan:PS50053	PANTHER:PTHR10677	PANTHER:PTHR10677:SF39	SMART:SM00165	SMART:SM00213	SMART:SM00727
SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0002337B00
InterPro:Ubiquilin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:49784370..49790905

Molecular Weight (calculated)

57243.3 Da

IEP (calculated)

4.493

GRAVY (calculated)

-0.490

Length

541 amino acids

Sequence
(BLAST)

001: MGGDATAAAE SATAESNAAN GVNINIRCSN GSKFSVQIGL DSTIRSFKDA VARNCDISAD QQRLIYKGRI LKDDQTLQSY GLEADHTVHL VRGFAPSNTT
101: GGTNSVGGGN TTTANTRGAG ANEGGGLGGP GFGASLFPGL GGNNGMGGGG LNGLFGAGFP DLEQMQQPFL SNPNLMRDIM NTPAMQNLIN NPDIVRNLIM
201: NNPQMQELMD RNPELAHILN DPSTLRQTLE ATRNPEIMRE MMRNTDRAMS NIESSPEGFN MLRRMYENVQ EPFLNATTMA GNTGNDAAAV RNQSTNPSTT
301: NSEATSPVPN TNPLPNPWSS TGTGGGQNNT RRSTTTGGEA RQSTPTGLGG LGLPDLEGML GGTGMPDAAM LTQLMQNPAI SQMMQSILSN PQTMNQILGV
401: NNEQRGMPDL NSLREVMQNP EFLRLFSSPE TLQQLLSFQQ ALLSQLGQQQ STQEPGQTGG GTGPMNNLGL EMLSSMFGGL GAGSLAVPNR SNEPPEQLYA
501: TQLSQLQEMG FFDTQENIRA LIATSGNVHA AVERLLGNSG Q

Best Arabidopsis Sequence Match ( AT2G17190.1 )
(BLAST)

001: MGGEADSRQP LTAEGVAVAV NVRCSNGTKF SVTTSLDSTV ESFKELIAQN SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTVHMVRGF VPSSPSAPAA
101: NAGNQTTAPQ AVGSNDSSNL GGGESLFPGL GFNPLGGGNA MAGLFGSGLP DLEQAQQQLA QNPNMIREMM NTPAIQNLMN NPEFMRSMIM NNPQMRELVD
201: RNPELGHVLN DPSILRQTLE AARNPELMRE MMRNTDRAMS NIESMPEGFN MLRRMYENVQ EPLMNATTMS ENAGNNTSSN PFAALLGNQG VTTQGSDTSN
301: NISAPNAETG TPNANPLPNP WGATAGQTTA PGRTNAGLGG LGGLGGLGGL GMLGADSPLG ATPDASQLSQ ILQNPAMSQM MQSVLSNPQY MNQLMSLNPQ
401: LRSMLDMNPQ LREMMQNPDF LRQFSSPEMM QQMMSLQQSL FSQNRNTAGQ DPTQTGAATG TANNGGLDLL MNMFGSLGAG GLSGTNQPNV PPEERFATQL
501: QQLQEMGFYD RAENIRALLA TNGNVNAAVE RLLGSIGQ

Arabidopsis Description

DSK2AUbiquitin domain-containing protein DSK2a [Source:UniProtKB/Swiss-Prot;Acc:Q9SII9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.