Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 7
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G23840.1 | Thale cress | extracellular | 76.22 | 74.85 |
| AT5G23820.1 | Thale cress | extracellular | 73.17 | 73.17 |
| Bra011987.1-P | Field mustard | extracellular | 39.02 | 38.79 |
| CDX71401 | Canola | extracellular | 39.02 | 38.79 |
| CDY04522 | Canola | extracellular | 39.02 | 38.79 |
| AT2G26370.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 32.32 | 30.64 |
| CDY15040 | Canola | cytosol, extracellular | 20.12 | 27.97 |
Protein Annotations
| MapMan:35.1 | EntrezGene:832448 | ProteinID:AED93218.1 | ArrayExpress:AT5G23830 | EnsemblPlantsGene:AT5G23830 | RefSeq:AT5G23830 |
| TAIR:AT5G23830 | RefSeq:AT5G23830-TAIR-G | EnsemblPlants:AT5G23830.1 | TAIR:AT5G23830.1 | EMBL:AY085159 | ProteinID:BAB10056.1 |
| EMBL:BT002792 | EMBL:BT004339 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0032366 | InterPro:ML_PG-PI_TP | InterPro:ML_dom | RefSeq:NP_197772.1 | PFAM:PF02221 |
| PO:PO:0000293 | PO:PO:0009005 | PO:PO:0020100 | PANTHER:PTHR11306 | PANTHER:PTHR11306:SF13 | UniProt:Q9FF97 |
| SMART:SM00737 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000000BDC8 | SEG:seg | : |
Description
MD-2-related lipid recognition domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9FF97]
Coordinates
chr5:+:8033665..8034977
Molecular Weight (calculated)
18089.6 Da
IEP (calculated)
4.169
GRAVY (calculated)
0.315
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMSHVQPVL FFLASLFFLL ALCSANDFEY CTKNGHDYGV VSWIEVFRVG PQENPTLTIN VFGTATKEIS AGTLVYVAYR SGDFTGLLKT YDLCDVSLAC
101: NIDSEIEAGD VFDFSLKDVL YVGFDEGIKY SVSLRQKTAE EEDPIIKMCI DFKVPASASA FVSI
101: NIDSEIEAGD VFDFSLKDVL YVGFDEGIKY SVSLRQKTAE EEDPIIKMCI DFKVPASASA FVSI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.