Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88166 | Canola | cytosol | 95.69 | 93.3 |
| AT5G25270.1 | Thale cress | cytosol | 66.77 | 65.11 |
| VIT_04s0008g06230.t01 | Wine grape | cytosol | 40.1 | 34.29 |
| Solyc06g036720.2.1 | Tomato | nucleus | 38.18 | 33.85 |
| Os08t0295100-00 | Rice | cytosol | 15.81 | 32.04 |
| KRH03572 | Soybean | nucleus | 36.26 | 31.75 |
| TraesCS3B01G094400.5 | Wheat | cytosol | 32.27 | 29.15 |
| TraesCS3A01G079200.2 | Wheat | cytosol | 32.43 | 29.04 |
| PGSC0003DMT400041410 | Potato | cytosol | 17.41 | 28.84 |
| Zm00001d001962_P014 | Maize | cytosol | 30.99 | 28.66 |
| TraesCS3D01G079600.2 | Wheat | cytosol | 32.11 | 28.63 |
| VIT_11s0118g00660.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 31.95 | 28.49 |
| CDX95199 | Canola | nucleus | 15.65 | 28.32 |
| KXG27341 | Sorghum | cytosol | 30.67 | 28.07 |
| GSMUA_Achr3P28400_001 | Banana | endoplasmic reticulum, plasma membrane | 30.83 | 27.73 |
| PGSC0003DMT400041411 | Potato | nucleus, plastid | 24.6 | 27.7 |
| HORVU3Hr1G014250.5 | Barley | cytosol, plastid | 31.63 | 26.09 |
| Os08t0295000-01 | Rice | cytosol | 4.15 | 21.85 |
| CDY42355 | Canola | nucleus | 24.44 | 18.7 |
| CDX95198 | Canola | nucleus | 7.03 | 9.5 |
Protein Annotations
| EnsemblPlants:CDX80493 | EnsemblPlantsGene:GSBRNA2T00133589001 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000626 | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | PANTHER:PTHR15204 | PANTHER:PTHR15204:SF3 |
| PFAM:PF00240 | PFscan:PS50053 | PRINTS:PR00348 | ProteinID:CDX80493 | ProteinID:CDX80493.1 | SEG:seg |
| SMART:SM00213 | SUPFAM:SSF54236 | UniParc:UPI0004EE01A2 | MapMan:35.1 | : | : |
Description
BnaC07g29510D
Coordinates
chrLK031821:-:912637..916927
Molecular Weight (calculated)
65864.4 Da
IEP (calculated)
5.143
GRAVY (calculated)
-0.514
Length
626 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHNGNDEVM ASQCASAMVD INIKTLDSQT HTLRVDKCVP VPALKEQIAS VTGVVTEQQR LICRGQVMKD DQLLSAYHVE DGHTLHMVVR QPISPLSEGL
101: TGNAAADPAA SAGDQPSGQR SRVLVGSFNI DQADGVYSDL GQIVSAVLGS LGISNTEGGG NGMEGIDSMG PLLESLTRSS GGRSVTPNEA DQTSTPLASS
201: QPAVIPDSLS TLSEYLNHLR QEFAANGSNA NNLQVPVNSM GNVQESASTT GESRIPRPSH LAEVLQSTRQ LLTGEVADCL SNLSRQLVDH VNVTDPSTRR
301: LCQSNMIQSG TLLENLGISL MELGRTTMML RLGQTPDDAV VNAGPAVFIS PTGGNPLPSH SSRTGTSTGG LQAGTTHSSP FGGQSVTSTP RNIEIRIRTG
401: SWMPSSGTNQ REESNTQQTP GQSVPPPPSG TTDSSPSVRG PSETPRNPVA LVIPVVARYQ QVSTGERNST GLNGVHQPVA ESSRQPQSAS TPGDSTSAPG
501: ARGFAEFRNR IHQILRPVTS REEPQVAVYS SATASTETNE AVSNAQVEPA ATGMDEGNFI SSVLQQIMPF ISQNVPSSSS AETAGRASNS NRQASSRQEE
601: EGAERGESSR RPEPPSSPES KRQKRE
101: TGNAAADPAA SAGDQPSGQR SRVLVGSFNI DQADGVYSDL GQIVSAVLGS LGISNTEGGG NGMEGIDSMG PLLESLTRSS GGRSVTPNEA DQTSTPLASS
201: QPAVIPDSLS TLSEYLNHLR QEFAANGSNA NNLQVPVNSM GNVQESASTT GESRIPRPSH LAEVLQSTRQ LLTGEVADCL SNLSRQLVDH VNVTDPSTRR
301: LCQSNMIQSG TLLENLGISL MELGRTTMML RLGQTPDDAV VNAGPAVFIS PTGGNPLPSH SSRTGTSTGG LQAGTTHSSP FGGQSVTSTP RNIEIRIRTG
401: SWMPSSGTNQ REESNTQQTP GQSVPPPPSG TTDSSPSVRG PSETPRNPVA LVIPVVARYQ QVSTGERNST GLNGVHQPVA ESSRQPQSAS TPGDSTSAPG
501: ARGFAEFRNR IHQILRPVTS REEPQVAVYS SATASTETNE AVSNAQVEPA ATGMDEGNFI SSVLQQIMPF ISQNVPSSSS AETAGRASNS NRQASSRQEE
601: EGAERGESSR RPEPPSSPES KRQKRE
001: MGDNGKDEIM VEASQCAGAM VEIKIKTLDS QTYTLRVDKC VPVPALKEQV ASVTGVVTEQ QRLICRGKVM KDDQLLSAYH VEDGHTLHLV VRQPVSESST
101: SNAAADPALS AGDSQGSQRS RVVVGSFNIA EQADGVYSDL GQIVSAVLGS LGISNPEGGI EGIDDMGPLH ERLSRSSGPG TARDSSGGRS ATPNAVDQTS
201: TPLASSQPAA IPDSLTTLSE YLNHLRQEFA ANGSNANNLQ DSENSVGNVQ DSASTTGESR IPRPSHLAEV LQSTRQLLIG EVADCLSNLS RQLVDHVNVT
301: DPPTRRLCQS NMLQSGSLLE SLGISLLELG RATMMLRLGQ TPDDAVVDAG PAVFISPTGR NPLPSHSSRL GTSIGSLQAG TAHSNPFAGQ SLASAPRNIE
401: IRIRTGSWVP ASGTNQREES TTQQTPGQTI PSTPSSTTDP APSTRGPSEP LRNPVALVIP VVARYQQISL GGRSSTGLDG VHQPVTESSR QPQSVGTPGR
501: EGDSSASPGG RGLSELRNRI HQFLRPLSRR ENQAGSTESQ GAANPSATAS TETNEAVANA QVEPATTTDE GNFISSVLQQ IMPFISQNVA SSSSGEAATG
601: RGSNSRQASS REAEEEEGTE RGNSTRRPEP PSPPESKRQR RE
101: SNAAADPALS AGDSQGSQRS RVVVGSFNIA EQADGVYSDL GQIVSAVLGS LGISNPEGGI EGIDDMGPLH ERLSRSSGPG TARDSSGGRS ATPNAVDQTS
201: TPLASSQPAA IPDSLTTLSE YLNHLRQEFA ANGSNANNLQ DSENSVGNVQ DSASTTGESR IPRPSHLAEV LQSTRQLLIG EVADCLSNLS RQLVDHVNVT
301: DPPTRRLCQS NMLQSGSLLE SLGISLLELG RATMMLRLGQ TPDDAVVDAG PAVFISPTGR NPLPSHSSRL GTSIGSLQAG TAHSNPFAGQ SLASAPRNIE
401: IRIRTGSWVP ASGTNQREES TTQQTPGQTI PSTPSSTTDP APSTRGPSEP LRNPVALVIP VVARYQQISL GGRSSTGLDG VHQPVTESSR QPQSVGTPGR
501: EGDSSASPGG RGLSELRNRI HQFLRPLSRR ENQAGSTESQ GAANPSATAS TETNEAVANA QVEPATTTDE GNFISSVLQQ IMPFISQNVA SSSSGEAATG
601: RGSNSRQASS REAEEEEGTE RGNSTRRPEP PSPPESKRQR RE
Arabidopsis Description
Ubiquitin-like superfamily protein [Source:TAIR;Acc:AT5G25270]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.