Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g036720.2.1 | Tomato | nucleus | 45.08 | 46.74 |
| PGSC0003DMT400041411 | Potato | nucleus, plastid | 31.28 | 41.19 |
| VIT_11s0118g00660.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 39.48 | 41.17 |
| AT5G25270.1 | Thale cress | cytosol | 35.52 | 40.5 |
| CDX80493 | Canola | cytosol | 34.29 | 40.1 |
| Bra009827.1-P | Field mustard | cytosol | 34.43 | 39.25 |
| CDX88166 | Canola | cytosol | 34.43 | 39.25 |
| KXG27341 | Sorghum | cytosol | 34.02 | 36.4 |
| Zm00001d001962_P014 | Maize | cytosol | 33.33 | 36.04 |
| Os08t0295100-00 | Rice | cytosol | 15.16 | 35.92 |
| GSMUA_Achr3P28400_001 | Banana | endoplasmic reticulum, plasma membrane | 33.33 | 35.06 |
| TraesCS3D01G079600.2 | Wheat | cytosol | 32.38 | 33.76 |
| TraesCS3A01G079200.2 | Wheat | cytosol | 32.1 | 33.62 |
| TraesCS3B01G094400.5 | Wheat | cytosol | 31.69 | 33.48 |
| HORVU3Hr1G014250.5 | Barley | cytosol, plastid | 32.92 | 31.75 |
| PGSC0003DMT400041410 | Potato | cytosol | 15.85 | 30.69 |
| Os08t0295000-01 | Rice | cytosol | 3.83 | 23.53 |
| VIT_09s0054g01880.t01 | Wine grape | nucleus | 24.73 | 19.15 |
Protein Annotations
| EntrezGene:100249152 | wikigene:100249152 | Gene3D:3.10.20.90 | MapMan:35.1 | ProteinID:CCB46849 | ProteinID:CCB46849.1 |
| ncoils:Coil | UniProt:F6H3W0 | EMBL:FN595231 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR000626 | EntrezGene:LOC100249152 | wikigene:LOC100249152 |
| PFAM:PF00240 | PRINTS:PR00348 | PFscan:PS50053 | PANTHER:PTHR15204 | PANTHER:PTHR15204:SF3 | SMART:SM00213 |
| SUPFAM:SSF54236 | TMHMM:TMhelix | UniParc:UPI000210955C | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom |
| ArrayExpress:VIT_04s0008g06230 | EnsemblPlantsGene:VIT_04s0008g06230 | EnsemblPlants:VIT_04s0008g06230.t01 | RefSeq:XP_002283083 | RefSeq:XP_002283083.2 | SEG:seg |
Description
No Description!
Coordinates
chr4:-:6043969..6059171
Molecular Weight (calculated)
77037.2 Da
IEP (calculated)
5.705
GRAVY (calculated)
-0.329
Length
732 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSTGGDEVM ISGSGEAQCS EATVEIKIKT LDSQTYTLRV DKCMPVPALK EQIASVTGVL SEQQRLICRG RVLKDDQLLS AYHVEDGHTL HLVVRQPFPP
101: SSESLPDNSA TDPASNTLRN QGFHVGSSVV VLSEQGDGVP DLSRIVSAVL SSFGVNNVRS GSEGADPRDP VPERGSGTPG LSGLRDSSRQ QPNQAATIDQ
201: SNPLNGASLL PNDVTLEQLQ PPVIPDSLTT LSQYLRNMRH EFGGSVRGHG NNSAAGIHGC DVQNSEATLQ SDVTQGGLPT PASLAEVILS TRQILIEQAA
301: EDLSQLTRQL ENHANVTDPL ARRSIQSNAL RLGAILRNLG ALLLELGRTT MTLRMGQTPN DAVVNAGPAL FISTSGPNPI MVQPLPFHPG TSFGAIPMGT
401: VQPGSGFSSG TLRSGFLPRN IDIRIRTGSM MPPSVINQRE PAGGQTSQGQ TSPALSGGVN SIHQPAAGAS RSSSSTREAE VRVVPIRTVV AAIPAAARHS
501: PSDSSRSSMG LFYPVLARVQ HVMSGNYNGA RGSQASDEHQ PRGLGAQQQS VPESASQQNI ESQGRDGGEN PNFQTASTQL RSGLDQLLRT IFPVEQIHVG
601: SDVNFQGTGT SSTGITGTTE AAANTEEIEP RVGDEGTFFS NLLHHIMPLI SENSAMGSSD AAADRADVGS INGQDSTTHP QENSDVGTSS GRQRDPPSPP
701: NSKRQKVIYF VLFLCFTFSG SITAVAVLVA SF
101: SSESLPDNSA TDPASNTLRN QGFHVGSSVV VLSEQGDGVP DLSRIVSAVL SSFGVNNVRS GSEGADPRDP VPERGSGTPG LSGLRDSSRQ QPNQAATIDQ
201: SNPLNGASLL PNDVTLEQLQ PPVIPDSLTT LSQYLRNMRH EFGGSVRGHG NNSAAGIHGC DVQNSEATLQ SDVTQGGLPT PASLAEVILS TRQILIEQAA
301: EDLSQLTRQL ENHANVTDPL ARRSIQSNAL RLGAILRNLG ALLLELGRTT MTLRMGQTPN DAVVNAGPAL FISTSGPNPI MVQPLPFHPG TSFGAIPMGT
401: VQPGSGFSSG TLRSGFLPRN IDIRIRTGSM MPPSVINQRE PAGGQTSQGQ TSPALSGGVN SIHQPAAGAS RSSSSTREAE VRVVPIRTVV AAIPAAARHS
501: PSDSSRSSMG LFYPVLARVQ HVMSGNYNGA RGSQASDEHQ PRGLGAQQQS VPESASQQNI ESQGRDGGEN PNFQTASTQL RSGLDQLLRT IFPVEQIHVG
601: SDVNFQGTGT SSTGITGTTE AAANTEEIEP RVGDEGTFFS NLLHHIMPLI SENSAMGSSD AAADRADVGS INGQDSTTHP QENSDVGTSS GRQRDPPSPP
701: NSKRQKVIYF VLFLCFTFSG SITAVAVLVA SF
001: MGDNGKDEIM VEASQCAGAM VEIKIKTLDS QTYTLRVDKC VPVPALKEQV ASVTGVVTEQ QRLICRGKVM KDDQLLSAYH VEDGHTLHLV VRQPVSESST
101: SNAAADPALS AGDSQGSQRS RVVVGSFNIA EQADGVYSDL GQIVSAVLGS LGISNPEGGI EGIDDMGPLH ERLSRSSGPG TARDSSGGRS ATPNAVDQTS
201: TPLASSQPAA IPDSLTTLSE YLNHLRQEFA ANGSNANNLQ DSENSVGNVQ DSASTTGESR IPRPSHLAEV LQSTRQLLIG EVADCLSNLS RQLVDHVNVT
301: DPPTRRLCQS NMLQSGSLLE SLGISLLELG RATMMLRLGQ TPDDAVVDAG PAVFISPTGR NPLPSHSSRL GTSIGSLQAG TAHSNPFAGQ SLASAPRNIE
401: IRIRTGSWVP ASGTNQREES TTQQTPGQTI PSTPSSTTDP APSTRGPSEP LRNPVALVIP VVARYQQISL GGRSSTGLDG VHQPVTESSR QPQSVGTPGR
501: EGDSSASPGG RGLSELRNRI HQFLRPLSRR ENQAGSTESQ GAANPSATAS TETNEAVANA QVEPATTTDE GNFISSVLQQ IMPFISQNVA SSSSGEAATG
601: RGSNSRQASS REAEEEEGTE RGNSTRRPEP PSPPESKRQR RE
101: SNAAADPALS AGDSQGSQRS RVVVGSFNIA EQADGVYSDL GQIVSAVLGS LGISNPEGGI EGIDDMGPLH ERLSRSSGPG TARDSSGGRS ATPNAVDQTS
201: TPLASSQPAA IPDSLTTLSE YLNHLRQEFA ANGSNANNLQ DSENSVGNVQ DSASTTGESR IPRPSHLAEV LQSTRQLLIG EVADCLSNLS RQLVDHVNVT
301: DPPTRRLCQS NMLQSGSLLE SLGISLLELG RATMMLRLGQ TPDDAVVDAG PAVFISPTGR NPLPSHSSRL GTSIGSLQAG TAHSNPFAGQ SLASAPRNIE
401: IRIRTGSWVP ASGTNQREES TTQQTPGQTI PSTPSSTTDP APSTRGPSEP LRNPVALVIP VVARYQQISL GGRSSTGLDG VHQPVTESSR QPQSVGTPGR
501: EGDSSASPGG RGLSELRNRI HQFLRPLSRR ENQAGSTESQ GAANPSATAS TETNEAVANA QVEPATTTDE GNFISSVLQQ IMPFISQNVA SSSSGEAATG
601: RGSNSRQASS REAEEEEGTE RGNSTRRPEP PSPPESKRQR RE
Arabidopsis Description
Ubiquitin-like superfamily protein [Source:TAIR;Acc:AT5G25270]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.