Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g036720.2.1 | Tomato | nucleus | 84.53 | 66.57 |
| VIT_04s0008g06230.t01 | Wine grape | cytosol | 41.19 | 31.28 |
| KRH03572 | Soybean | nucleus | 35.97 | 27.97 |
| CDX80493 | Canola | cytosol | 27.7 | 24.6 |
| VIT_11s0118g00660.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 30.94 | 24.5 |
| Bra009827.1-P | Field mustard | cytosol | 28.06 | 24.3 |
| CDX88166 | Canola | cytosol | 27.88 | 24.14 |
| GSMUA_Achr3P28400_001 | Banana | endoplasmic reticulum, plasma membrane | 29.32 | 23.42 |
| AT5G25270.1 | Thale cress | cytosol | 25.9 | 22.43 |
| Zm00001d001962_P014 | Maize | cytosol | 26.98 | 22.16 |
| KXG27341 | Sorghum | cytosol | 26.08 | 21.2 |
| TraesCS3B01G094400.5 | Wheat | cytosol | 26.26 | 21.07 |
| TraesCS3A01G079200.2 | Wheat | cytosol | 26.08 | 20.74 |
| TraesCS3D01G079600.2 | Wheat | cytosol | 25.9 | 20.51 |
| HORVU3Hr1G014250.5 | Barley | cytosol, plastid | 26.62 | 19.5 |
| Os08t0295000-01 | Rice | cytosol | 4.14 | 19.33 |
| PGSC0003DMT400025616 | Potato | plastid | 19.24 | 15.83 |
| Os08t0295100-00 | Rice | cytosol | 6.47 | 11.65 |
| PGSC0003DMT400041410 | Potato | cytosol | 7.37 | 10.85 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400041411 | EnsemblPlantsGene:PGSC0003DMG402016046 | PANTHER:PTHR15204 | PANTHER:PTHR15204:SF3 | PGSC:PGSC0003DMG402016046 | SEG:seg |
| UniParc:UPI000296C70E | UniProt:M1BBC5 | MapMan:35.1 | : | : | : |
Description
Scythe/bat3 [Source:PGSC_GENE;Acc:PGSC0003DMG402016046]
Coordinates
chr6:-:20815007..20824649
Molecular Weight (calculated)
59038.1 Da
IEP (calculated)
5.492
GRAVY (calculated)
-0.575
Length
556 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFGPASLGN IRDSGRSQTE QADTRDQSSV TTSASARPTD VPLQAPVIPD SLTTLTQYLS HLTAEFRANV RGQSETTQSA GVHVADRTAL EATTHSIGER
101: GFPTPASLAE VIILTRQLFM EQVVECLSQF STLLENQANV TNPGERMRIQ SYALRTGGLF RNIGAMLLEL GRTTMTLRMG ETPDDAVVNA GPAVFVSTAG
201: PNPIMVQPLP FQPNTSFGAV PVGTVQNNTG FSGGSVSSGF IPRNIDIRIR TGSFMASNPN RREPAGGSQQ PGQAGQAASI GGSSDQQNTG GTRSSSARES
301: AVRVVPIRTV VTAVPASVGR STSDSVRNPM GIFYPVLARV QHVSSGNSNN SGASQESDQN NLHGVETRDP ANPDSAGQQQ NAGLPNVEGN FSSFSEASNG
401: EEFSAQYQSS VDQLLRSLFS GESVHPENVN DRGVSMNSSS GDGVEAENNS NSQETEAAGD EGVFLSNILR HIIPIISETN GTSSANLPSE RSNMAEDRSD
501: GRQTQAQENT ENASSSHQRR DPPLPPSSKR QKKIRKSDCQ NKYSPPLSYL PPHLRP
101: GFPTPASLAE VIILTRQLFM EQVVECLSQF STLLENQANV TNPGERMRIQ SYALRTGGLF RNIGAMLLEL GRTTMTLRMG ETPDDAVVNA GPAVFVSTAG
201: PNPIMVQPLP FQPNTSFGAV PVGTVQNNTG FSGGSVSSGF IPRNIDIRIR TGSFMASNPN RREPAGGSQQ PGQAGQAASI GGSSDQQNTG GTRSSSARES
301: AVRVVPIRTV VTAVPASVGR STSDSVRNPM GIFYPVLARV QHVSSGNSNN SGASQESDQN NLHGVETRDP ANPDSAGQQQ NAGLPNVEGN FSSFSEASNG
401: EEFSAQYQSS VDQLLRSLFS GESVHPENVN DRGVSMNSSS GDGVEAENNS NSQETEAAGD EGVFLSNILR HIIPIISETN GTSSANLPSE RSNMAEDRSD
501: GRQTQAQENT ENASSSHQRR DPPLPPSSKR QKKIRKSDCQ NKYSPPLSYL PPHLRP
001: MGDNGKDEIM VEASQCAGAM VEIKIKTLDS QTYTLRVDKC VPVPALKEQV ASVTGVVTEQ QRLICRGKVM KDDQLLSAYH VEDGHTLHLV VRQPVSESST
101: SNAAADPALS AGDSQGSQRS RVVVGSFNIA EQADGVYSDL GQIVSAVLGS LGISNPEGGI EGIDDMGPLH ERLSRSSGPG TARDSSGGRS ATPNAVDQTS
201: TPLASSQPAA IPDSLTTLSE YLNHLRQEFA ANGSNANNLQ DSENSVGNVQ DSASTTGESR IPRPSHLAEV LQSTRQLLIG EVADCLSNLS RQLVDHVNVT
301: DPPTRRLCQS NMLQSGSLLE SLGISLLELG RATMMLRLGQ TPDDAVVDAG PAVFISPTGR NPLPSHSSRL GTSIGSLQAG TAHSNPFAGQ SLASAPRNIE
401: IRIRTGSWVP ASGTNQREES TTQQTPGQTI PSTPSSTTDP APSTRGPSEP LRNPVALVIP VVARYQQISL GGRSSTGLDG VHQPVTESSR QPQSVGTPGR
501: EGDSSASPGG RGLSELRNRI HQFLRPLSRR ENQAGSTESQ GAANPSATAS TETNEAVANA QVEPATTTDE GNFISSVLQQ IMPFISQNVA SSSSGEAATG
601: RGSNSRQASS REAEEEEGTE RGNSTRRPEP PSPPESKRQR RE
101: SNAAADPALS AGDSQGSQRS RVVVGSFNIA EQADGVYSDL GQIVSAVLGS LGISNPEGGI EGIDDMGPLH ERLSRSSGPG TARDSSGGRS ATPNAVDQTS
201: TPLASSQPAA IPDSLTTLSE YLNHLRQEFA ANGSNANNLQ DSENSVGNVQ DSASTTGESR IPRPSHLAEV LQSTRQLLIG EVADCLSNLS RQLVDHVNVT
301: DPPTRRLCQS NMLQSGSLLE SLGISLLELG RATMMLRLGQ TPDDAVVDAG PAVFISPTGR NPLPSHSSRL GTSIGSLQAG TAHSNPFAGQ SLASAPRNIE
401: IRIRTGSWVP ASGTNQREES TTQQTPGQTI PSTPSSTTDP APSTRGPSEP LRNPVALVIP VVARYQQISL GGRSSTGLDG VHQPVTESSR QPQSVGTPGR
501: EGDSSASPGG RGLSELRNRI HQFLRPLSRR ENQAGSTESQ GAANPSATAS TETNEAVANA QVEPATTTDE GNFISSVLQQ IMPFISQNVA SSSSGEAATG
601: RGSNSRQASS REAEEEEGTE RGNSTRRPEP PSPPESKRQR RE
Arabidopsis Description
Ubiquitin-like superfamily protein [Source:TAIR;Acc:AT5G25270]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.