Factsheet for Bra009827.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88166	Canola	cytosol	98.91	98.91
AT5G25270.1	Thale cress	cytosol	63.4	63.4
VIT_04s0008g06230.t01	Wine grape	cytosol	39.25	34.43
Solyc06g036720.2.1	Tomato	nucleus	36.45	33.14
Os08t0295100-00	Rice	cytosol	15.89	33.01
KRH03572	Soybean	nucleus	35.05	31.47
TraesCS3A01G079200.2	Wheat	cytosol	31.46	28.9
TraesCS3B01G094400.5	Wheat	cytosol	31.15	28.86
Zm00001d001962_P014	Maize	cytosol	30.06	28.51
TraesCS3D01G079600.2	Wheat	cytosol	31.0	28.35
PGSC0003DMT400041410	Potato	cytosol	16.67	28.31
VIT_11s0118g00660.t01	Wine grape	endoplasmic reticulum, plasma membrane	30.84	28.21
PGSC0003DMT400041411	Potato	nucleus, plastid	24.3	28.06
KXG27341	Sorghum	cytosol	29.75	27.92
GSMUA_Achr3P28400_001	Banana	endoplasmic reticulum, plasma membrane	29.75	27.44
HORVU3Hr1G014250.5	Barley	cytosol, plastid	30.84	26.09
Os08t0295000-01	Rice	cytosol	3.58	19.33
Bra027974.1-P	Field mustard	nucleus	24.14	18.86

Protein Annotations

EnsemblPlants:Bra009827.1	EnsemblPlants:Bra009827.1-P	EnsemblPlantsGene:Bra009827	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000626	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	PANTHER:PTHR15204	PANTHER:PTHR15204:SF3
PFAM:PF00240	PFscan:PS50053	SEG:seg	SMART:SM00213	SUPFAM:SSF54236	UniParc:UPI000253F2E0
UniProt:M4D029	MapMan:35.1	:	:	:	:

Description

AT5G25270 (E=5e-249) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT5G42220.1); Has 1533 Blast hits to 627 proteins in 167 species: Archae - 0; Bacteria - 307; Metazoa - 363; Fungi - 153; Plants - 33; Viruses - 41; Other Eukaryotes - 636 (source: NCBI BLink).

Coordinates

chrA06:-:17544985..17549619

Molecular Weight (calculated)

67392.2 Da

IEP (calculated)

5.355

GRAVY (calculated)

-0.486

Length

642 amino acids

Sequence
(BLAST)

001: MAHTGNDEVM ASQCASAMVE INIKTLDSQT HTLRVDKCVP VPALKEQIAS VTGVVTEQQR LICRGQVMKD DQLLSAYHVE DGHTLHMVVR QPIPPLAEGL
101: AGNAAADPAA SAGDQPSGQR SRVLVGSFNI DQADGVYSDL GQIVSAVLGS LGISNTEGGN GVEGVDAMGP LLESLTRSSG GRSVTSNEAD QTSTPLASSQ
201: PAVIPDSLST LSEYLNHLRQ EFAANGSNAN NLQVPVNSMG NVQESASTTG EGRIPRPSHL AEVLQSTRQL LTGEVADCLS NLSRQLVDHV NVTDPSTRRS
301: CQSNMIQSGT LLENLGISLM ELGRTTMMLR LGQTPDDAVV NAGPAVFISP TGGNPLPSHS SRTGTSIGGL QAGTTHSSPF GGQSVTSTPR NIEIRIRTGS
401: WMPSSGTNQR EESNTQQTPG QSVPPPPSGT TDSAPSVRGP SETPRNPVAL VIPVVARYQQ VSTGERNSTG LNGGHQPVAE SSRQPQSAST PGDSSSAPGA
501: RGFAEFRNRI HQILRPVTSR EEPQVTVYSS ATASTETNEA VSNAQVEPAA TGMDEGNFIS SVLQQIMPFI SHNVPSSSSA ETAGRASNSN RQASSRQEEE
601: GAERGESSRR PEPPSSPESK RQKVTLVKMV NEAKANNPNW GS

Best Arabidopsis Sequence Match ( AT5G25270.1 )
(BLAST)

001: MGDNGKDEIM VEASQCAGAM VEIKIKTLDS QTYTLRVDKC VPVPALKEQV ASVTGVVTEQ QRLICRGKVM KDDQLLSAYH VEDGHTLHLV VRQPVSESST
101: SNAAADPALS AGDSQGSQRS RVVVGSFNIA EQADGVYSDL GQIVSAVLGS LGISNPEGGI EGIDDMGPLH ERLSRSSGPG TARDSSGGRS ATPNAVDQTS
201: TPLASSQPAA IPDSLTTLSE YLNHLRQEFA ANGSNANNLQ DSENSVGNVQ DSASTTGESR IPRPSHLAEV LQSTRQLLIG EVADCLSNLS RQLVDHVNVT
301: DPPTRRLCQS NMLQSGSLLE SLGISLLELG RATMMLRLGQ TPDDAVVDAG PAVFISPTGR NPLPSHSSRL GTSIGSLQAG TAHSNPFAGQ SLASAPRNIE
401: IRIRTGSWVP ASGTNQREES TTQQTPGQTI PSTPSSTTDP APSTRGPSEP LRNPVALVIP VVARYQQISL GGRSSTGLDG VHQPVTESSR QPQSVGTPGR
501: EGDSSASPGG RGLSELRNRI HQFLRPLSRR ENQAGSTESQ GAANPSATAS TETNEAVANA QVEPATTTDE GNFISSVLQQ IMPFISQNVA SSSSGEAATG
601: RGSNSRQASS REAEEEEGTE RGNSTRRPEP PSPPESKRQR RE

Arabidopsis Description

Ubiquitin-like superfamily protein [Source:TAIR;Acc:AT5G25270]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.