Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 6
- golgi 5
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os08t0295100-00 | Rice | cytosol | 15.23 | 34.3 |
| KXG27341 | Sorghum | cytosol | 33.19 | 33.77 |
| TraesCS3B01G094400.5 | Wheat | cytosol | 33.33 | 33.48 |
| Zm00001d001962_P014 | Maize | cytosol | 32.47 | 33.38 |
| VIT_04s0008g06230.t01 | Wine grape | cytosol | 35.06 | 33.33 |
| TraesCS3D01G079600.2 | Wheat | cytosol | 33.19 | 32.91 |
| TraesCS3A01G079200.2 | Wheat | cytosol | 32.76 | 32.62 |
| Solyc06g036720.2.1 | Tomato | nucleus | 31.9 | 31.44 |
| KRH03572 | Soybean | nucleus | 31.9 | 31.05 |
| CDX80493 | Canola | cytosol | 27.73 | 30.83 |
| HORVU3Hr1G014250.5 | Barley | cytosol, plastid | 33.62 | 30.83 |
| VIT_11s0118g00660.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 30.89 | 30.63 |
| CDX88166 | Canola | cytosol | 27.44 | 29.75 |
| Bra009827.1-P | Field mustard | cytosol | 27.44 | 29.75 |
| PGSC0003DMT400041411 | Potato | nucleus, plastid | 23.42 | 29.32 |
| AT5G25270.1 | Thale cress | cytosol | 26.01 | 28.19 |
| PGSC0003DMT400041410 | Potato | cytosol | 12.64 | 23.28 |
| Os08t0295000-01 | Rice | cytosol | 3.16 | 18.49 |
| GSMUA_Achr5P18990_001 | Banana | cytosol | 22.99 | 15.56 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P28400_001 | EnsemblPlants:GSMUA_Achr3T28400_001 | EnsemblPlantsGene:GSMUA_Achr3G28400_001 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR000626 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | PANTHER:PTHR15204 | PANTHER:PTHR15204:SF3 |
| PFAM:PF00240 | PFscan:PS50053 | SEG:seg | SMART:SM00213 | SUPFAM:SSF54236 | UniParc:UPI000295479D |
| UniProt:M0SIK6 | MapMan:35.1 | : | : | : | : |
Description
ubiquitin family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G28400_001]
Coordinates
chr3:+:27653688..27665351
Molecular Weight (calculated)
73790.7 Da
IEP (calculated)
5.841
GRAVY (calculated)
-0.404
Length
696 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVALVVVSF SFTGKPFLLT QLIGVCKVPI PKLKEQIATV TGVISEQQRL ICRGKVLKDD EILSAYHVED GHTLHLVVRQ PHQSTPSPST GQMGHEGASG
101: QSDASRNHGS QSTRTLVFET VNIGQGDHRT QLSQIISSIL NAVATRNTGS QTSGPNLRNL SAGASVDYPG IELGSGQVPN QFHSAVPLVS EQPTVIPDSL
201: TTIHQYLGFM RDEFTREGLS ANGGEHRNEA SAAYMNNDSL QFHQSFSPGG LPSPASLVEV LLSTRQLLME QADGYISQFA RGLEDQVNLT DPLVRLRLQN
301: SVFRSGVLLQ NLGSLLLELG RTTMTLRLGQ TPSEAVINAG PAVFISASGP NPVMVQPVPF YPGSSFSPRV GATYAGHGSQ GEPLGPSLVP GNISIRFRAG
401: RPVPVSPHNQ TEQGGQQQQE TTNPTRNSSA ANAAPQAFSG VSNNASLSEE SGVRVLPIRT VVAVPGGVNR STSDPSGSSA VGLIYPLLAR VQHVATGSLD
501: DARGTESSNE INHDGHNAEE QANIGSTMHA QNLESTIGNF INDIDSTPAN AVPLFSEFNP SVNESASYQG SLRDFISAGQ QGPPSSNSTS NTEELGHISQ
601: LASRLDQWLQ SIFPGEQVVV GSSSHQEMTR SSVTDQTDIG RNSQPEEHTG VGQDGSPTSH GSSTAHVAGE NLNDLSNSQS RRDPPEAPSS KRTRRD
101: QSDASRNHGS QSTRTLVFET VNIGQGDHRT QLSQIISSIL NAVATRNTGS QTSGPNLRNL SAGASVDYPG IELGSGQVPN QFHSAVPLVS EQPTVIPDSL
201: TTIHQYLGFM RDEFTREGLS ANGGEHRNEA SAAYMNNDSL QFHQSFSPGG LPSPASLVEV LLSTRQLLME QADGYISQFA RGLEDQVNLT DPLVRLRLQN
301: SVFRSGVLLQ NLGSLLLELG RTTMTLRLGQ TPSEAVINAG PAVFISASGP NPVMVQPVPF YPGSSFSPRV GATYAGHGSQ GEPLGPSLVP GNISIRFRAG
401: RPVPVSPHNQ TEQGGQQQQE TTNPTRNSSA ANAAPQAFSG VSNNASLSEE SGVRVLPIRT VVAVPGGVNR STSDPSGSSA VGLIYPLLAR VQHVATGSLD
501: DARGTESSNE INHDGHNAEE QANIGSTMHA QNLESTIGNF INDIDSTPAN AVPLFSEFNP SVNESASYQG SLRDFISAGQ QGPPSSNSTS NTEELGHISQ
601: LASRLDQWLQ SIFPGEQVVV GSSSHQEMTR SSVTDQTDIG RNSQPEEHTG VGQDGSPTSH GSSTAHVAGE NLNDLSNSQS RRDPPEAPSS KRTRRD
001: MGDNGKDEIM VEASQCAGAM VEIKIKTLDS QTYTLRVDKC VPVPALKEQV ASVTGVVTEQ QRLICRGKVM KDDQLLSAYH VEDGHTLHLV VRQPVSESST
101: SNAAADPALS AGDSQGSQRS RVVVGSFNIA EQADGVYSDL GQIVSAVLGS LGISNPEGGI EGIDDMGPLH ERLSRSSGPG TARDSSGGRS ATPNAVDQTS
201: TPLASSQPAA IPDSLTTLSE YLNHLRQEFA ANGSNANNLQ DSENSVGNVQ DSASTTGESR IPRPSHLAEV LQSTRQLLIG EVADCLSNLS RQLVDHVNVT
301: DPPTRRLCQS NMLQSGSLLE SLGISLLELG RATMMLRLGQ TPDDAVVDAG PAVFISPTGR NPLPSHSSRL GTSIGSLQAG TAHSNPFAGQ SLASAPRNIE
401: IRIRTGSWVP ASGTNQREES TTQQTPGQTI PSTPSSTTDP APSTRGPSEP LRNPVALVIP VVARYQQISL GGRSSTGLDG VHQPVTESSR QPQSVGTPGR
501: EGDSSASPGG RGLSELRNRI HQFLRPLSRR ENQAGSTESQ GAANPSATAS TETNEAVANA QVEPATTTDE GNFISSVLQQ IMPFISQNVA SSSSGEAATG
601: RGSNSRQASS REAEEEEGTE RGNSTRRPEP PSPPESKRQR RE
101: SNAAADPALS AGDSQGSQRS RVVVGSFNIA EQADGVYSDL GQIVSAVLGS LGISNPEGGI EGIDDMGPLH ERLSRSSGPG TARDSSGGRS ATPNAVDQTS
201: TPLASSQPAA IPDSLTTLSE YLNHLRQEFA ANGSNANNLQ DSENSVGNVQ DSASTTGESR IPRPSHLAEV LQSTRQLLIG EVADCLSNLS RQLVDHVNVT
301: DPPTRRLCQS NMLQSGSLLE SLGISLLELG RATMMLRLGQ TPDDAVVDAG PAVFISPTGR NPLPSHSSRL GTSIGSLQAG TAHSNPFAGQ SLASAPRNIE
401: IRIRTGSWVP ASGTNQREES TTQQTPGQTI PSTPSSTTDP APSTRGPSEP LRNPVALVIP VVARYQQISL GGRSSTGLDG VHQPVTESSR QPQSVGTPGR
501: EGDSSASPGG RGLSELRNRI HQFLRPLSRR ENQAGSTESQ GAANPSATAS TETNEAVANA QVEPATTTDE GNFISSVLQQ IMPFISQNVA SSSSGEAATG
601: RGSNSRQASS REAEEEEGTE RGNSTRRPEP PSPPESKRQR RE
Arabidopsis Description
Ubiquitin-like superfamily protein [Source:TAIR;Acc:AT5G25270]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.