Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80493 | Canola | cytosol | 65.11 | 66.77 |
| Bra009827.1-P | Field mustard | cytosol | 63.4 | 63.4 |
| CDX88166 | Canola | cytosol | 63.24 | 63.24 |
| VIT_04s0008g06230.t01 | Wine grape | cytosol | 40.5 | 35.52 |
| Os08t0295100-00 | Rice | cytosol | 16.36 | 33.98 |
| Solyc06g036720.2.1 | Tomato | nucleus | 37.07 | 33.71 |
| KRH03572 | Soybean | nucleus | 35.67 | 32.03 |
| PGSC0003DMT400041410 | Potato | cytosol | 17.45 | 29.63 |
| TraesCS3B01G094400.5 | Wheat | cytosol | 31.93 | 29.58 |
| Zm00001d001962_P014 | Maize | cytosol | 31.0 | 29.39 |
| TraesCS3A01G079200.2 | Wheat | cytosol | 31.93 | 29.33 |
| TraesCS3D01G079600.2 | Wheat | cytosol | 31.78 | 29.06 |
| KXG27341 | Sorghum | cytosol | 30.84 | 28.95 |
| VIT_11s0118g00660.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 30.69 | 28.06 |
| HORVU3Hr1G014250.5 | Barley | cytosol, plastid | 31.31 | 26.48 |
| GSMUA_Achr3P28400_001 | Banana | endoplasmic reticulum, plasma membrane | 28.19 | 26.01 |
| PGSC0003DMT400041411 | Potato | nucleus, plastid | 22.43 | 25.9 |
| Os08t0295000-01 | Rice | cytosol | 3.74 | 20.17 |
| AT5G42220.1 | Thale cress | nucleus | 25.23 | 18.43 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | EntrezGene:832599 | UniProt:A0A178UP71 | ProteinID:AED93420.2 | ArrayExpress:AT5G25270 |
| EnsemblPlantsGene:AT5G25270 | RefSeq:AT5G25270 | TAIR:AT5G25270 | RefSeq:AT5G25270-TAIR-G | EnsemblPlants:AT5G25270.1 | TAIR:AT5G25270.1 |
| UniProt:F4JWQ4 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR000626 | RefSeq:NP_001318644.1 |
| ProteinID:OAO95463.1 | PFAM:PF00240 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00348 |
| PFscan:PS50053 | PANTHER:PTHR15204 | PANTHER:PTHR15204:SF3 | SMART:SM00213 | SUPFAM:SSF54236 | UniParc:UPI0007DE971E |
| InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | SEG:seg | : | : |
Description
Ubiquitin-like superfamily protein [Source:TAIR;Acc:AT5G25270]
Coordinates
chr5:-:8757434..8763005
Molecular Weight (calculated)
67416.0 Da
IEP (calculated)
5.107
GRAVY (calculated)
-0.534
Length
642 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDNGKDEIM VEASQCAGAM VEIKIKTLDS QTYTLRVDKC VPVPALKEQV ASVTGVVTEQ QRLICRGKVM KDDQLLSAYH VEDGHTLHLV VRQPVSESST
101: SNAAADPALS AGDSQGSQRS RVVVGSFNIA EQADGVYSDL GQIVSAVLGS LGISNPEGGI EGIDDMGPLH ERLSRSSGPG TARDSSGGRS ATPNAVDQTS
201: TPLASSQPAA IPDSLTTLSE YLNHLRQEFA ANGSNANNLQ DSENSVGNVQ DSASTTGESR IPRPSHLAEV LQSTRQLLIG EVADCLSNLS RQLVDHVNVT
301: DPPTRRLCQS NMLQSGSLLE SLGISLLELG RATMMLRLGQ TPDDAVVDAG PAVFISPTGR NPLPSHSSRL GTSIGSLQAG TAHSNPFAGQ SLASAPRNIE
401: IRIRTGSWVP ASGTNQREES TTQQTPGQTI PSTPSSTTDP APSTRGPSEP LRNPVALVIP VVARYQQISL GGRSSTGLDG VHQPVTESSR QPQSVGTPGR
501: EGDSSASPGG RGLSELRNRI HQFLRPLSRR ENQAGSTESQ GAANPSATAS TETNEAVANA QVEPATTTDE GNFISSVLQQ IMPFISQNVA SSSSGEAATG
601: RGSNSRQASS REAEEEEGTE RGNSTRRPEP PSPPESKRQR RE
101: SNAAADPALS AGDSQGSQRS RVVVGSFNIA EQADGVYSDL GQIVSAVLGS LGISNPEGGI EGIDDMGPLH ERLSRSSGPG TARDSSGGRS ATPNAVDQTS
201: TPLASSQPAA IPDSLTTLSE YLNHLRQEFA ANGSNANNLQ DSENSVGNVQ DSASTTGESR IPRPSHLAEV LQSTRQLLIG EVADCLSNLS RQLVDHVNVT
301: DPPTRRLCQS NMLQSGSLLE SLGISLLELG RATMMLRLGQ TPDDAVVDAG PAVFISPTGR NPLPSHSSRL GTSIGSLQAG TAHSNPFAGQ SLASAPRNIE
401: IRIRTGSWVP ASGTNQREES TTQQTPGQTI PSTPSSTTDP APSTRGPSEP LRNPVALVIP VVARYQQISL GGRSSTGLDG VHQPVTESSR QPQSVGTPGR
501: EGDSSASPGG RGLSELRNRI HQFLRPLSRR ENQAGSTESQ GAANPSATAS TETNEAVANA QVEPATTTDE GNFISSVLQQ IMPFISQNVA SSSSGEAATG
601: RGSNSRQASS REAEEEEGTE RGNSTRRPEP PSPPESKRQR RE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.