Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G079200.2 | Wheat | cytosol | 94.66 | 93.85 |
| TraesCS3D01G079600.2 | Wheat | cytosol | 94.08 | 92.88 |
| HORVU3Hr1G014250.5 | Barley | cytosol, plastid | 91.05 | 83.14 |
| KXG27341 | Sorghum | cytosol | 62.34 | 63.16 |
| Zm00001d001962_P014 | Maize | cytosol | 60.46 | 61.89 |
| Os08t0295000-01 | Rice | cytosol | 9.81 | 57.14 |
| Os08t0295100-00 | Rice | cytosol | 23.23 | 52.1 |
| GSMUA_Achr3P28400_001 | Banana | endoplasmic reticulum, plasma membrane | 33.48 | 33.33 |
| CDX80493 | Canola | cytosol | 29.15 | 32.27 |
| AT5G25270.1 | Thale cress | cytosol | 29.58 | 31.93 |
| VIT_04s0008g06230.t01 | Wine grape | cytosol | 33.48 | 31.69 |
| CDX88166 | Canola | cytosol | 28.86 | 31.15 |
| Bra009827.1-P | Field mustard | cytosol | 28.86 | 31.15 |
| KRH03572 | Soybean | nucleus | 32.03 | 31.05 |
| Solyc06g036720.2.1 | Tomato | nucleus | 31.6 | 31.02 |
| VIT_11s0118g00660.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 30.16 | 29.77 |
| PGSC0003DMT400041411 | Potato | nucleus, plastid | 21.07 | 26.26 |
| PGSC0003DMT400041410 | Potato | cytosol | 11.83 | 21.69 |
| TraesCS6B01G020900.1 | Wheat | nucleus | 25.54 | 18.17 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G094400.5 | EnsemblPlantsGene:TraesCS3B01G094400 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000626 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | PANTHER:PTHR15204 | PANTHER:PTHR15204:SF3 | PFAM:PF00240 |
| PFscan:PS50053 | SEG:seg | SMART:SM00213 | SUPFAM:SSF54236 | TIGR:cd01809 | MapMan:35.1 |
Description
No Description!
Coordinates
chr3B:-:63107636..63118086
Molecular Weight (calculated)
72910.9 Da
IEP (calculated)
6.587
GRAVY (calculated)
-0.455
Length
693 amino acids
Sequence
(BLAST)
(BLAST)
001: MECNSSDVQM SHCAEGSETT IEIKIKTLDS QTYNLRVNKC VPIPLLKDKI ATVTGVLSEQ QRLICRGRVL KDDELLSAYH VEDGHTLHLV VRQPGQPAAS
101: GNAGNEASVP NSTRRHGRTV RSIVLEAVDL DQGSEFSSIA QILQSMLTSP QVQGGSAPSD TRPSEPMQSS FPNDVRVELD QQQASLHFPE AAVGSSMPNV
201: IPDSVSTISQ YINFMRDSFR REGFNGNAQT VGNIDPGTAG SAHAGGTQSQ ESQPGSTSAH HVLPTAALLA ETMHSTRQLL VDLAGELLSQ LSTQLGDLGN
301: VSDSTTRRNL QQSAMRQGVL LQSLGSLLLE LGRTTMTLRI NPAPSEAVVN SGPAVFISPS GPNPLMVPPV PFFPGPRSVQ MGQMFSSLGS QGSVLHPRDA
401: DIHIRTSGSV PVASTNPSES VGAQQAQEHT DRTGNASHSN AREAFARVAG GAPFAVGSGV RLLPLRTAGA VPAGISRSPS GSSSGGVGVI IPMITRVHQR
501: VNSNGSGARN GQTSNEPHSD THANLQPNPQ PPQAREAGNL GHPVEVNVGN SSQASHGQQN GQGPFSQLVD SLQWIGSLFS GENPPANVSS QHAPAASAEP
601: VDARTVASDE GIRFANLVRQ IMPHISQVEN QSQSTPADTS STPSQANAIP ISAAVPESAN GSRDGPSDSR NSRQHSRDPV EGPNSKRQRR MSE
101: GNAGNEASVP NSTRRHGRTV RSIVLEAVDL DQGSEFSSIA QILQSMLTSP QVQGGSAPSD TRPSEPMQSS FPNDVRVELD QQQASLHFPE AAVGSSMPNV
201: IPDSVSTISQ YINFMRDSFR REGFNGNAQT VGNIDPGTAG SAHAGGTQSQ ESQPGSTSAH HVLPTAALLA ETMHSTRQLL VDLAGELLSQ LSTQLGDLGN
301: VSDSTTRRNL QQSAMRQGVL LQSLGSLLLE LGRTTMTLRI NPAPSEAVVN SGPAVFISPS GPNPLMVPPV PFFPGPRSVQ MGQMFSSLGS QGSVLHPRDA
401: DIHIRTSGSV PVASTNPSES VGAQQAQEHT DRTGNASHSN AREAFARVAG GAPFAVGSGV RLLPLRTAGA VPAGISRSPS GSSSGGVGVI IPMITRVHQR
501: VNSNGSGARN GQTSNEPHSD THANLQPNPQ PPQAREAGNL GHPVEVNVGN SSQASHGQQN GQGPFSQLVD SLQWIGSLFS GENPPANVSS QHAPAASAEP
601: VDARTVASDE GIRFANLVRQ IMPHISQVEN QSQSTPADTS STPSQANAIP ISAAVPESAN GSRDGPSDSR NSRQHSRDPV EGPNSKRQRR MSE
001: MGDNGKDEIM VEASQCAGAM VEIKIKTLDS QTYTLRVDKC VPVPALKEQV ASVTGVVTEQ QRLICRGKVM KDDQLLSAYH VEDGHTLHLV VRQPVSESST
101: SNAAADPALS AGDSQGSQRS RVVVGSFNIA EQADGVYSDL GQIVSAVLGS LGISNPEGGI EGIDDMGPLH ERLSRSSGPG TARDSSGGRS ATPNAVDQTS
201: TPLASSQPAA IPDSLTTLSE YLNHLRQEFA ANGSNANNLQ DSENSVGNVQ DSASTTGESR IPRPSHLAEV LQSTRQLLIG EVADCLSNLS RQLVDHVNVT
301: DPPTRRLCQS NMLQSGSLLE SLGISLLELG RATMMLRLGQ TPDDAVVDAG PAVFISPTGR NPLPSHSSRL GTSIGSLQAG TAHSNPFAGQ SLASAPRNIE
401: IRIRTGSWVP ASGTNQREES TTQQTPGQTI PSTPSSTTDP APSTRGPSEP LRNPVALVIP VVARYQQISL GGRSSTGLDG VHQPVTESSR QPQSVGTPGR
501: EGDSSASPGG RGLSELRNRI HQFLRPLSRR ENQAGSTESQ GAANPSATAS TETNEAVANA QVEPATTTDE GNFISSVLQQ IMPFISQNVA SSSSGEAATG
601: RGSNSRQASS REAEEEEGTE RGNSTRRPEP PSPPESKRQR RE
101: SNAAADPALS AGDSQGSQRS RVVVGSFNIA EQADGVYSDL GQIVSAVLGS LGISNPEGGI EGIDDMGPLH ERLSRSSGPG TARDSSGGRS ATPNAVDQTS
201: TPLASSQPAA IPDSLTTLSE YLNHLRQEFA ANGSNANNLQ DSENSVGNVQ DSASTTGESR IPRPSHLAEV LQSTRQLLIG EVADCLSNLS RQLVDHVNVT
301: DPPTRRLCQS NMLQSGSLLE SLGISLLELG RATMMLRLGQ TPDDAVVDAG PAVFISPTGR NPLPSHSSRL GTSIGSLQAG TAHSNPFAGQ SLASAPRNIE
401: IRIRTGSWVP ASGTNQREES TTQQTPGQTI PSTPSSTTDP APSTRGPSEP LRNPVALVIP VVARYQQISL GGRSSTGLDG VHQPVTESSR QPQSVGTPGR
501: EGDSSASPGG RGLSELRNRI HQFLRPLSRR ENQAGSTESQ GAANPSATAS TETNEAVANA QVEPATTTDE GNFISSVLQQ IMPFISQNVA SSSSGEAATG
601: RGSNSRQASS REAEEEEGTE RGNSTRRPEP PSPPESKRQR RE
Arabidopsis Description
Ubiquitin-like superfamily protein [Source:TAIR;Acc:AT5G25270]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.