Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G079600.2 | Wheat | cytosol | 97.42 | 97.01 |
| TraesCS3B01G094400.5 | Wheat | cytosol | 93.85 | 94.66 |
| HORVU3Hr1G014250.5 | Barley | cytosol, plastid | 92.99 | 85.64 |
| Os08t0295000-01 | Rice | cytosol | 11.16 | 65.55 |
| KXG27341 | Sorghum | cytosol | 61.52 | 62.87 |
| Zm00001d001962_P014 | Maize | cytosol | 59.94 | 61.89 |
| Os08t0295100-00 | Rice | cytosol | 24.03 | 54.37 |
| GSMUA_Achr3P28400_001 | Banana | endoplasmic reticulum, plasma membrane | 32.62 | 32.76 |
| CDX80493 | Canola | cytosol | 29.04 | 32.43 |
| VIT_04s0008g06230.t01 | Wine grape | cytosol | 33.62 | 32.1 |
| AT5G25270.1 | Thale cress | cytosol | 29.33 | 31.93 |
| Bra009827.1-P | Field mustard | cytosol | 28.9 | 31.46 |
| CDX88166 | Canola | cytosol | 28.9 | 31.46 |
| Solyc06g036720.2.1 | Tomato | nucleus | 31.47 | 31.16 |
| KRH03572 | Soybean | nucleus | 31.76 | 31.05 |
| VIT_11s0118g00660.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 30.19 | 30.06 |
| PGSC0003DMT400041411 | Potato | nucleus, plastid | 20.74 | 26.08 |
| PGSC0003DMT400041410 | Potato | cytosol | 12.45 | 23.02 |
| TraesCS6A01G013700.2 | Wheat | nucleus | 25.61 | 18.47 |
| TraesCS6A01G013800.1 | Wheat | plastid | 3.15 | 14.19 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G079200.2 | EnsemblPlantsGene:TraesCS3A01G079200 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000626 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | PANTHER:PTHR15204 | PANTHER:PTHR15204:SF3 | PFAM:PF00240 |
| PFscan:PS50053 | SEG:seg | SMART:SM00213 | SUPFAM:SSF54236 | TIGR:cd01809 | MapMan:35.1 |
Description
No Description!
Coordinates
chr3A:+:51280614..51291420
Molecular Weight (calculated)
73415.6 Da
IEP (calculated)
6.441
GRAVY (calculated)
-0.435
Length
699 amino acids
Sequence
(BLAST)
(BLAST)
001: MECNSSDVQM SHCAEGSETT IEIKIKTLDS QTYNLRVNKC VPMPLLKDKI ATVTGVLSEQ QRLICRGRVL KDDELLSAYH VEDGHTLHLV VRQPGQPAAS
101: GNAGNEASVS NSTRLHGRTV RSIVLEAVDL DQGSEFSSIA QILQSMLTSP QVQGGSAPSD TRPSEPMQSS FPNDVRVELD QQQASLHFPE AAVGSSMPNV
201: IPDSVSTISQ YINLMRDSFR REGFNGNAQT VGNIDPGTAG SAHASGTQSQ ESQPGSTSAH HVLPTAALLA ETMHSTRQLL VDLAGELLSQ LSTQLGDLGN
301: VSDSTTRRNL QQSAMRQGVL LQSLGSLLLE LGRTTMMLRI NPAPSEAVVN SGPAVFISPS GPNPLMVPPV PFFPGPRSVQ MGQMFSSLGS QGSVLHPRDA
401: DVHIRTSGSV PVASTNPSES VGAQQAQEHT DRTGNASHSN ARGAFARVAG GAPFAVGSGV RLLPLRTVGA VPAGISRSPS GSSSGGVGVI IPMITRVHQR
501: VNSNGSGARN GQTPNEPHSD THANLQPNPQ PSQAHEAGNL GHPVEVNVGN TSQASHGQQN GQGPFSQLMD SLQWIGSLFS GENPPANGTS QHAPAASAEP
601: VDARNHVVPE ASVASDEGIR FANLVRQIMP HISQVENQPQ STPADTSSTP SQANAIPISA AVPESANGSR DGPSDSRNSR QHSRDPVDGP NSKRQRMSE
101: GNAGNEASVS NSTRLHGRTV RSIVLEAVDL DQGSEFSSIA QILQSMLTSP QVQGGSAPSD TRPSEPMQSS FPNDVRVELD QQQASLHFPE AAVGSSMPNV
201: IPDSVSTISQ YINLMRDSFR REGFNGNAQT VGNIDPGTAG SAHASGTQSQ ESQPGSTSAH HVLPTAALLA ETMHSTRQLL VDLAGELLSQ LSTQLGDLGN
301: VSDSTTRRNL QQSAMRQGVL LQSLGSLLLE LGRTTMMLRI NPAPSEAVVN SGPAVFISPS GPNPLMVPPV PFFPGPRSVQ MGQMFSSLGS QGSVLHPRDA
401: DVHIRTSGSV PVASTNPSES VGAQQAQEHT DRTGNASHSN ARGAFARVAG GAPFAVGSGV RLLPLRTVGA VPAGISRSPS GSSSGGVGVI IPMITRVHQR
501: VNSNGSGARN GQTPNEPHSD THANLQPNPQ PSQAHEAGNL GHPVEVNVGN TSQASHGQQN GQGPFSQLMD SLQWIGSLFS GENPPANGTS QHAPAASAEP
601: VDARNHVVPE ASVASDEGIR FANLVRQIMP HISQVENQPQ STPADTSSTP SQANAIPISA AVPESANGSR DGPSDSRNSR QHSRDPVDGP NSKRQRMSE
001: MGDNGKDEIM VEASQCAGAM VEIKIKTLDS QTYTLRVDKC VPVPALKEQV ASVTGVVTEQ QRLICRGKVM KDDQLLSAYH VEDGHTLHLV VRQPVSESST
101: SNAAADPALS AGDSQGSQRS RVVVGSFNIA EQADGVYSDL GQIVSAVLGS LGISNPEGGI EGIDDMGPLH ERLSRSSGPG TARDSSGGRS ATPNAVDQTS
201: TPLASSQPAA IPDSLTTLSE YLNHLRQEFA ANGSNANNLQ DSENSVGNVQ DSASTTGESR IPRPSHLAEV LQSTRQLLIG EVADCLSNLS RQLVDHVNVT
301: DPPTRRLCQS NMLQSGSLLE SLGISLLELG RATMMLRLGQ TPDDAVVDAG PAVFISPTGR NPLPSHSSRL GTSIGSLQAG TAHSNPFAGQ SLASAPRNIE
401: IRIRTGSWVP ASGTNQREES TTQQTPGQTI PSTPSSTTDP APSTRGPSEP LRNPVALVIP VVARYQQISL GGRSSTGLDG VHQPVTESSR QPQSVGTPGR
501: EGDSSASPGG RGLSELRNRI HQFLRPLSRR ENQAGSTESQ GAANPSATAS TETNEAVANA QVEPATTTDE GNFISSVLQQ IMPFISQNVA SSSSGEAATG
601: RGSNSRQASS REAEEEEGTE RGNSTRRPEP PSPPESKRQR RE
101: SNAAADPALS AGDSQGSQRS RVVVGSFNIA EQADGVYSDL GQIVSAVLGS LGISNPEGGI EGIDDMGPLH ERLSRSSGPG TARDSSGGRS ATPNAVDQTS
201: TPLASSQPAA IPDSLTTLSE YLNHLRQEFA ANGSNANNLQ DSENSVGNVQ DSASTTGESR IPRPSHLAEV LQSTRQLLIG EVADCLSNLS RQLVDHVNVT
301: DPPTRRLCQS NMLQSGSLLE SLGISLLELG RATMMLRLGQ TPDDAVVDAG PAVFISPTGR NPLPSHSSRL GTSIGSLQAG TAHSNPFAGQ SLASAPRNIE
401: IRIRTGSWVP ASGTNQREES TTQQTPGQTI PSTPSSTTDP APSTRGPSEP LRNPVALVIP VVARYQQISL GGRSSTGLDG VHQPVTESSR QPQSVGTPGR
501: EGDSSASPGG RGLSELRNRI HQFLRPLSRR ENQAGSTESQ GAANPSATAS TETNEAVANA QVEPATTTDE GNFISSVLQQ IMPFISQNVA SSSSGEAATG
601: RGSNSRQASS REAEEEEGTE RGNSTRRPEP PSPPESKRQR RE
Arabidopsis Description
Ubiquitin-like superfamily protein [Source:TAIR;Acc:AT5G25270]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.