Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G020900.1 | Wheat | nucleus | 93.7 | 93.22 |
| TraesCS6D01G017100.2 | Wheat | nucleus | 92.67 | 91.63 |
| TraesCS6A01G013800.1 | Wheat | plastid | 13.21 | 82.58 |
| HORVU6Hr1G002580.6 | Barley | plastid | 88.24 | 80.58 |
| Os07t0498800-01 | Rice | cytosol | 36.53 | 52.84 |
| KXG25466 | Sorghum | nucleus | 46.54 | 47.62 |
| Zm00001d052721_P001 | Maize | plasma membrane | 41.59 | 44.53 |
| CDX95199 | Canola | nucleus | 12.18 | 34.1 |
| CDY42355 | Canola | nucleus | 26.83 | 31.78 |
| Bra027974.1-P | Field mustard | nucleus | 26.63 | 31.39 |
| GSMUA_Achr5P18990_001 | Banana | cytosol | 33.13 | 31.23 |
| AT5G42220.1 | Thale cress | nucleus | 26.83 | 29.58 |
| Solyc04g082160.2.1 | Tomato | nucleus | 25.28 | 28.59 |
| KRH17506 | Soybean | nucleus | 26.83 | 27.78 |
| KRH06004 | Soybean | nucleus | 26.93 | 27.77 |
| PGSC0003DMT400025616 | Potato | plastid | 19.2 | 27.51 |
| VIT_09s0054g01880.t01 | Wine grape | nucleus | 25.7 | 26.35 |
| CDX95198 | Canola | nucleus | 12.49 | 26.13 |
| TraesCS3A01G079200.2 | Wheat | cytosol | 18.47 | 25.61 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G013700.2 | EnsemblPlantsGene:TraesCS6A01G013700 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000626 | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS | InterPro:Ubiquitin_dom | PANTHER:PTHR15204 |
| PANTHER:PTHR15204:SF5 | PFAM:PF00240 | PFscan:PS50053 | PRINTS:PR00348 | ScanProsite:PS00299 | SEG:seg |
| SMART:SM00213 | SUPFAM:SSF54236 | TIGR:cd01809 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr6A:+:6728159..6734966
Molecular Weight (calculated)
100159.0 Da
IEP (calculated)
4.576
GRAVY (calculated)
-0.356
Length
969 amino acids
Sequence
(BLAST)
(BLAST)
001: MADDGASGAG SSTARDGADG PESATIEINI KTLESQVHKL RVDKNETVLN LKEKIVDVAM IPVEQQRLIF RGRVLKDDHL LSEYHLEDGY TLHLVARRTA
101: EGQHSSETPE ANPNANVNNA GNGAILGDYM SRETIDVMVS EGVINDIPAT VRDILGNFLG MPGGVANATF SVPLNQPPPD GANNGRAQPG QAPPGFSILN
201: HQIHVSQLPP SGAIPRNMVI PDSMTTLLEY INRMDQVLQN NGVPPSMDSN AQEPPTPATD DAYLNQSFPS PEVLASVVER AQQLLGGSAS SALSHLAQRI
301: QTDAATADPS VRSQIQNESA QLGVAMQHLG SMLFELGRTM MTLRMGPSPI NAFVNAGPAV YITPTGPSPI MVQPSFQSAP HFGVSSIPPV FGVSGPFGIV
401: DPSRANGVNI HGGASATSGP SVGSTTASAT TANGESQNAE RTQGGNPSAT RGLPPHTVVA AIPAFPGRSS VGVILPVQMR SQVAVPNQST GPQGSQTAAG
501: NGSQPNPAYV IPQASSGSAI SSMIAQISAQ VANALAANPQ ALASLTSSVL NPAAQGPHPP TTNNGAGTVS SVTSGNTQVQ NELPGSHHGQ TSLNVQSHAT
601: GAGTVPSNTS DPSLTPQDIS TVSVSDVDSS QQHSGELAAA SLGGQMTGTH TGDVPLDMPA ENSELKSKPS DGETGESAKP TASGGSGPLG LGGGLQPKRR
701: SRVTKPSGTS SDSGEAVNTT SVPRSQEAVL RGQQALQALV SRGANASSGS VTASQAPSST PRSAARMPLR RPGGEGQVDL GSMLSSVLNN PMFGNLMSNV
801: AAQTGMESPA DVRNIMEDLT QNRAVMDTLS SMVQNVDAPQ RGQGGFDLAS MMQQMMPVVS QVLGGASPRR AGTDVQPRQN DREVSDAAGG RSSQMDLQEA
901: CQRIEQHDAP EEIFGAVLET AAQAYGDDES IEVMLEELAN DPELADEYMK LLLEQVGERV ESESEAKQS
101: EGQHSSETPE ANPNANVNNA GNGAILGDYM SRETIDVMVS EGVINDIPAT VRDILGNFLG MPGGVANATF SVPLNQPPPD GANNGRAQPG QAPPGFSILN
201: HQIHVSQLPP SGAIPRNMVI PDSMTTLLEY INRMDQVLQN NGVPPSMDSN AQEPPTPATD DAYLNQSFPS PEVLASVVER AQQLLGGSAS SALSHLAQRI
301: QTDAATADPS VRSQIQNESA QLGVAMQHLG SMLFELGRTM MTLRMGPSPI NAFVNAGPAV YITPTGPSPI MVQPSFQSAP HFGVSSIPPV FGVSGPFGIV
401: DPSRANGVNI HGGASATSGP SVGSTTASAT TANGESQNAE RTQGGNPSAT RGLPPHTVVA AIPAFPGRSS VGVILPVQMR SQVAVPNQST GPQGSQTAAG
501: NGSQPNPAYV IPQASSGSAI SSMIAQISAQ VANALAANPQ ALASLTSSVL NPAAQGPHPP TTNNGAGTVS SVTSGNTQVQ NELPGSHHGQ TSLNVQSHAT
601: GAGTVPSNTS DPSLTPQDIS TVSVSDVDSS QQHSGELAAA SLGGQMTGTH TGDVPLDMPA ENSELKSKPS DGETGESAKP TASGGSGPLG LGGGLQPKRR
701: SRVTKPSGTS SDSGEAVNTT SVPRSQEAVL RGQQALQALV SRGANASSGS VTASQAPSST PRSAARMPLR RPGGEGQVDL GSMLSSVLNN PMFGNLMSNV
801: AAQTGMESPA DVRNIMEDLT QNRAVMDTLS SMVQNVDAPQ RGQGGFDLAS MMQQMMPVVS QVLGGASPRR AGTDVQPRQN DREVSDAAGG RSSQMDLQEA
901: CQRIEQHDAP EEIFGAVLET AAQAYGDDES IEVMLEELAN DPELADEYMK LLLEQVGERV ESESEAKQS
001: MGDNGKDEIM VEASQCAGAM VEIKIKTLDS QTYTLRVDKC VPVPALKEQV ASVTGVVTEQ QRLICRGKVM KDDQLLSAYH VEDGHTLHLV VRQPVSESST
101: SNAAADPALS AGDSQGSQRS RVVVGSFNIA EQADGVYSDL GQIVSAVLGS LGISNPEGGI EGIDDMGPLH ERLSRSSGPG TARDSSGGRS ATPNAVDQTS
201: TPLASSQPAA IPDSLTTLSE YLNHLRQEFA ANGSNANNLQ DSENSVGNVQ DSASTTGESR IPRPSHLAEV LQSTRQLLIG EVADCLSNLS RQLVDHVNVT
301: DPPTRRLCQS NMLQSGSLLE SLGISLLELG RATMMLRLGQ TPDDAVVDAG PAVFISPTGR NPLPSHSSRL GTSIGSLQAG TAHSNPFAGQ SLASAPRNIE
401: IRIRTGSWVP ASGTNQREES TTQQTPGQTI PSTPSSTTDP APSTRGPSEP LRNPVALVIP VVARYQQISL GGRSSTGLDG VHQPVTESSR QPQSVGTPGR
501: EGDSSASPGG RGLSELRNRI HQFLRPLSRR ENQAGSTESQ GAANPSATAS TETNEAVANA QVEPATTTDE GNFISSVLQQ IMPFISQNVA SSSSGEAATG
601: RGSNSRQASS REAEEEEGTE RGNSTRRPEP PSPPESKRQR RE
101: SNAAADPALS AGDSQGSQRS RVVVGSFNIA EQADGVYSDL GQIVSAVLGS LGISNPEGGI EGIDDMGPLH ERLSRSSGPG TARDSSGGRS ATPNAVDQTS
201: TPLASSQPAA IPDSLTTLSE YLNHLRQEFA ANGSNANNLQ DSENSVGNVQ DSASTTGESR IPRPSHLAEV LQSTRQLLIG EVADCLSNLS RQLVDHVNVT
301: DPPTRRLCQS NMLQSGSLLE SLGISLLELG RATMMLRLGQ TPDDAVVDAG PAVFISPTGR NPLPSHSSRL GTSIGSLQAG TAHSNPFAGQ SLASAPRNIE
401: IRIRTGSWVP ASGTNQREES TTQQTPGQTI PSTPSSTTDP APSTRGPSEP LRNPVALVIP VVARYQQISL GGRSSTGLDG VHQPVTESSR QPQSVGTPGR
501: EGDSSASPGG RGLSELRNRI HQFLRPLSRR ENQAGSTESQ GAANPSATAS TETNEAVANA QVEPATTTDE GNFISSVLQQ IMPFISQNVA SSSSGEAATG
601: RGSNSRQASS REAEEEEGTE RGNSTRRPEP PSPPESKRQR RE
Arabidopsis Description
Ubiquitin-like superfamily protein [Source:TAIR;Acc:AT5G25270]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.