Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42355 | Canola | nucleus | 27.72 | 34.84 |
| Bra027974.1-P | Field mustard | nucleus | 27.72 | 34.67 |
| TraesCS6A01G013800.1 | Wheat | plastid | 5.16 | 34.19 |
| KRH17506 | Soybean | nucleus | 31.13 | 34.19 |
| Os07t0498800-01 | Rice | cytosol | 22.28 | 34.18 |
| KXG25466 | Sorghum | nucleus | 31.42 | 34.11 |
| KRH06004 | Soybean | nucleus | 31.13 | 34.04 |
| CDX95199 | Canola | nucleus | 11.38 | 33.81 |
| Solyc04g082160.2.1 | Tomato | nucleus | 27.82 | 33.37 |
| TraesCS6B01G020900.1 | Wheat | nucleus | 31.61 | 33.37 |
| VIT_09s0054g01880.t01 | Wine grape | nucleus | 30.64 | 33.33 |
| TraesCS6A01G013700.2 | Wheat | nucleus | 31.23 | 33.13 |
| CDX95198 | Canola | nucleus | 14.59 | 32.4 |
| AT5G42220.1 | Thale cress | nucleus | 27.14 | 31.74 |
| TraesCS6D01G017100.2 | Wheat | nucleus | 30.25 | 31.73 |
| PGSC0003DMT400025616 | Potato | plastid | 20.23 | 30.77 |
| Zm00001d052721_P001 | Maize | plasma membrane | 26.85 | 30.5 |
| HORVU6Hr1G002580.6 | Barley | plastid | 31.13 | 30.16 |
| GSMUA_Achr3P28400_001 | Banana | endoplasmic reticulum, plasma membrane | 15.56 | 22.99 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSMUA_Achr5G18990_001 |
| EnsemblPlants:GSMUA_Achr5P18990_001 | EnsemblPlants:GSMUA_Achr5T18990_001 | InterPro:IPR000626 | UniProt:M0SZS8 | PFAM:PF00240 | PRINTS:PR00348 |
| ScanProsite:PS00299 | PFscan:PS50053 | PANTHER:PTHR15204 | PANTHER:PTHR15204:SF5 | SMART:SM00213 | SUPFAM:SSF54236 |
| UniParc:UPI000294F83A | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS | InterPro:Ubiquitin_dom | SEG:seg |
Description
ubiquitin family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G18990_001]
Coordinates
chr5:-:20495051..20511590
Molecular Weight (calculated)
108011.0 Da
IEP (calculated)
5.828
GRAVY (calculated)
-0.453
Length
1028 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLDSRVYTFR VNKDTPVPSL KAKVASATGV PVELQRLIFR GKVLKDDHHL SDYHLDDGHT LHLVARQPVQ AQTQPGTVAG DSSRVNDNQG SDSTSNAPHN
0101: RIGQVSHSVV LGTVNIGDQG EGVISDIGRV VGAVLQSLGG GILTPGVGAS NTPSAANQVS PGGETEGSRN VNGRNQLGNQ AQPAVTVVNQ PFQVQLASPG
0201: SVPRNMVIPD SMTTLLDFIN RMELILQNSG SQSSSPSNLR DPPRSDNASL NLNRLPTPDV LASVIEHARL LLSGNAVAAF SRMVERLRRE TTSADPMIRS
0301: QIQSDAMHMG LVMQHLGAML LELGRTTMML RMGPSPDGSF VNSGPAVYIS STGPNPIMVQ PFPPQMSPLF TASSPLVNGP SMPLAGGDPL RNINIHILSG
0401: TSLAPGVLSS GGRANTGDAN RSERQNVEQP RQNGSGSGNA DPMRGIPART VVAAIPARPS GETASQVLGV VYPVHVRSQQ SGPPHSGSFQ GSHPPVGSGM
0501: EPNTSVIVPH PSESGSIPAI VAQVNAHIDG AFAGNALGQS SSFTSQQSAA AQGSHPAMNS ESQSDMNVQL PQGSSGMDSI SAIVRQINEQ IANVISGNSP
0601: NQSSSSTAGQ QQVAAGSLST DTDDNFASTH DDNDPDSNNK LFESQISDTT TRGDGKQPQL EGNGFSTTGD HQRSPNLEES STAGLIGLTS CGSDTNSATL
0701: GKFAEKTLMS GVASHDSSSS QASGSGRSTP LGLGLGGLQP KRRSKSTKPV GKDRVSCDAT SVNQNQESIS RGQEILRSIV SRSSDVNRVN VNSPSTSLPS
0801: VLGQFVDGMS LGGQGSQEQV DAGGMISHVL QSPVFNNLLA NVAGQTGLGS PADLRSMMEQ CTQSPAMRSA LNNIVQQVEG EGQDHGSMLL GSGSSEGGID
0901: FSRMIQQMMP MVSQALGRVS SRSPPVTVMG SEHQPQSNNV THNVERMQDR NVQIDLREAR ERIEQCDSSG NIFRAMLEGA GNLYGEETSY EDLQELGDDA
1001: ELGNEYLEML QRHIRERLRK QSNSSEKS
0101: RIGQVSHSVV LGTVNIGDQG EGVISDIGRV VGAVLQSLGG GILTPGVGAS NTPSAANQVS PGGETEGSRN VNGRNQLGNQ AQPAVTVVNQ PFQVQLASPG
0201: SVPRNMVIPD SMTTLLDFIN RMELILQNSG SQSSSPSNLR DPPRSDNASL NLNRLPTPDV LASVIEHARL LLSGNAVAAF SRMVERLRRE TTSADPMIRS
0301: QIQSDAMHMG LVMQHLGAML LELGRTTMML RMGPSPDGSF VNSGPAVYIS STGPNPIMVQ PFPPQMSPLF TASSPLVNGP SMPLAGGDPL RNINIHILSG
0401: TSLAPGVLSS GGRANTGDAN RSERQNVEQP RQNGSGSGNA DPMRGIPART VVAAIPARPS GETASQVLGV VYPVHVRSQQ SGPPHSGSFQ GSHPPVGSGM
0501: EPNTSVIVPH PSESGSIPAI VAQVNAHIDG AFAGNALGQS SSFTSQQSAA AQGSHPAMNS ESQSDMNVQL PQGSSGMDSI SAIVRQINEQ IANVISGNSP
0601: NQSSSSTAGQ QQVAAGSLST DTDDNFASTH DDNDPDSNNK LFESQISDTT TRGDGKQPQL EGNGFSTTGD HQRSPNLEES STAGLIGLTS CGSDTNSATL
0701: GKFAEKTLMS GVASHDSSSS QASGSGRSTP LGLGLGGLQP KRRSKSTKPV GKDRVSCDAT SVNQNQESIS RGQEILRSIV SRSSDVNRVN VNSPSTSLPS
0801: VLGQFVDGMS LGGQGSQEQV DAGGMISHVL QSPVFNNLLA NVAGQTGLGS PADLRSMMEQ CTQSPAMRSA LNNIVQQVEG EGQDHGSMLL GSGSSEGGID
0901: FSRMIQQMMP MVSQALGRVS SRSPPVTVMG SEHQPQSNNV THNVERMQDR NVQIDLREAR ERIEQCDSSG NIFRAMLEGA GNLYGEETSY EDLQELGDDA
1001: ELGNEYLEML QRHIRERLRK QSNSSEKS
001: MEDQPINQCS SSTNASEKTP ESTLELNIKT LDSRTYTFQV NKNETVLLFK EKIASETGVP VGQQRLIFRG RVLKDDHPLS EYHLENGHTL HLIVRQPAES
101: APSSGTPSQG ATANDGNNTN GGPSRNGRHV SHSVVLGSFN VGDQTEGIVP DLSRVIGAVL NSFGVSGQLP TNHSTNGTQS SMPSNQSSNA PPGNTSDGEP
201: GIGGQSQATG HSQPRQAFPG VSFQTSMPRV VQIPVTAATT IPIPSFLTPI PDSLDTLMEF INRMEQALSQ NGYQPDTSSA GSGGRPREEL PRNRRGAATP
301: EALSVVLRNA QHLLSGLGVS SLSHIAGRLE QDGSSSDPTL RSQIQTEAVQ VGLAMQHLGA LLLELGRTIL TLRMAPSPEL SYVNAGPAVY ISPSGPNPIM
401: VQPFPHQISP LFTGATVSSN PLTGPVGLGT AQRHINIHIH AGTSGSPMLS SVGNQRSNGE GGQGDRDSNT SSVPAAVPSH STGENVSAGV QPGLGDDVSV
501: AQINARIRDM VNIMQGRDQI PSGIESLERD MSTGHGVATA MPEQPTNIAT TCAPESSSGS LHDLPSERSN SVCQNEKDLG GDLEHPARAK DTSCTTGQSS
601: APSGDATGDA KETNKATPEV ATATPLGLGL GGLDRKKRSK QPKVSGKTED SGTSATLEGV QQSSGTSGQQ LLQSLFSGSS RSDETGLRRG QGSDDRVDVS
701: SAMSQVLESP VLDGLLAGVS RQAGVDSPNM LRNMLQQFTQ NPQIMNTVQQ IAQQVDGQEI ENMMSGGAQG EGGGFDFSRM VQQMMPLVSR AFSQGGPLPH
801: PATIQPDDRQ PSQVNVQSMA QMIEHSDPPE DVFRAMVENA AISQDELVNE LCCDEALSQE YAELLRRDIE GRLKDDQGL
101: APSSGTPSQG ATANDGNNTN GGPSRNGRHV SHSVVLGSFN VGDQTEGIVP DLSRVIGAVL NSFGVSGQLP TNHSTNGTQS SMPSNQSSNA PPGNTSDGEP
201: GIGGQSQATG HSQPRQAFPG VSFQTSMPRV VQIPVTAATT IPIPSFLTPI PDSLDTLMEF INRMEQALSQ NGYQPDTSSA GSGGRPREEL PRNRRGAATP
301: EALSVVLRNA QHLLSGLGVS SLSHIAGRLE QDGSSSDPTL RSQIQTEAVQ VGLAMQHLGA LLLELGRTIL TLRMAPSPEL SYVNAGPAVY ISPSGPNPIM
401: VQPFPHQISP LFTGATVSSN PLTGPVGLGT AQRHINIHIH AGTSGSPMLS SVGNQRSNGE GGQGDRDSNT SSVPAAVPSH STGENVSAGV QPGLGDDVSV
501: AQINARIRDM VNIMQGRDQI PSGIESLERD MSTGHGVATA MPEQPTNIAT TCAPESSSGS LHDLPSERSN SVCQNEKDLG GDLEHPARAK DTSCTTGQSS
601: APSGDATGDA KETNKATPEV ATATPLGLGL GGLDRKKRSK QPKVSGKTED SGTSATLEGV QQSSGTSGQQ LLQSLFSGSS RSDETGLRRG QGSDDRVDVS
701: SAMSQVLESP VLDGLLAGVS RQAGVDSPNM LRNMLQQFTQ NPQIMNTVQQ IAQQVDGQEI ENMMSGGAQG EGGGFDFSRM VQQMMPLVSR AFSQGGPLPH
801: PATIQPDDRQ PSQVNVQSMA QMIEHSDPPE DVFRAMVENA AISQDELVNE LCCDEALSQE YAELLRRDIE GRLKDDQGL
Arabidopsis Description
AT5g42220/K5J14_2 [Source:UniProtKB/TrEMBL;Acc:Q8L745]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.