Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d052721_P001 | Maize | plasma membrane | 72.54 | 75.91 |
| Os07t0498800-01 | Rice | cytosol | 37.91 | 53.58 |
| TraesCS6A01G013800.1 | Wheat | plastid | 8.34 | 50.97 |
| TraesCS6B01G020900.1 | Wheat | nucleus | 48.05 | 46.71 |
| TraesCS6A01G013700.2 | Wheat | nucleus | 47.62 | 46.54 |
| TraesCS6D01G017100.2 | Wheat | nucleus | 47.73 | 46.12 |
| HORVU6Hr1G002580.6 | Barley | plastid | 47.73 | 42.6 |
| CDX95199 | Canola | nucleus | 13.09 | 35.84 |
| GSMUA_Achr5P18990_001 | Banana | cytosol | 34.11 | 31.42 |
| Bra027974.1-P | Field mustard | nucleus | 26.72 | 30.78 |
| CDY42355 | Canola | nucleus | 26.5 | 30.68 |
| Solyc04g082160.2.1 | Tomato | nucleus | 27.14 | 29.99 |
| PGSC0003DMT400025616 | Potato | plastid | 20.17 | 28.25 |
| VIT_09s0054g01880.t01 | Wine grape | nucleus | 28.19 | 28.25 |
| KRH17506 | Soybean | nucleus | 27.67 | 27.99 |
| KRH06004 | Soybean | nucleus | 27.77 | 27.98 |
| AT5G42220.1 | Thale cress | nucleus | 25.55 | 27.53 |
| CDX95198 | Canola | nucleus | 12.67 | 25.92 |
| KXG27341 | Sorghum | cytosol | 17.21 | 23.83 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | UniProt:A0A1B6PIF2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000626 | EnsemblPlants:KXG25466 | ProteinID:KXG25466 | ProteinID:KXG25466.1 | PFAM:PF00240 | PRINTS:PR00348 |
| ScanProsite:PS00299 | PFscan:PS50053 | PANTHER:PTHR15204 | PANTHER:PTHR15204:SF5 | SMART:SM00213 | EnsemblPlantsGene:SORBI_3007G183900 |
| SUPFAM:SSF54236 | UniParc:UPI00081AE2B3 | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS | InterPro:Ubiquitin_dom |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr7:-:61708148..61715686
Molecular Weight (calculated)
98499.2 Da
IEP (calculated)
4.738
GRAVY (calculated)
-0.419
Length
947 amino acids
Sequence
(BLAST)
(BLAST)
001: MADDASHGAS SSTVKPADDP ESTIEINIKT LDSQVHKLRV EKNAPVSVLK EKVVEATGVP LDQQRLIFRG RVLKDDHLLS EYHLEDGYTL HLVARRAAEG
101: QNSSGAPEGN THANVNVTGN EGLLDDISRS VRDLLGSLGV AMSGGVTNTA FSVPLTTAPE GPNNVPGRTQ PMNPAQPGFS VLNHQIQVTQ LQPPGAIPRN
201: MIIPDSLTTL SEYMDRIDQV LQNNGAPPSR DSESQQQPTV DDANVNPRYP SPDVLASVIE RAQQLLGGSA ASALSHIAQR IRQDGETADA SLRREIQTES
301: VQLGISMQHL GAMFFELGRT MMMLRTGRSP SEAFVNSGPA VYINSTGPNP IMVQPSYQNT PPFGVSNIPV MGGISGAFGI VDPSRSSGFG DPFRRMNVPS
401: TGASATSGSA AGTTTTSEGA INGNRQDAAR TQGGNPPGHP AATRGLPTRT VVAAVPARSS VEAPNHVFSV ILPVQVRGQV AVPTQSSQGS QTAVGNGAQG
501: NSTSAVPQAS VGGVSGVPPI VAQVANALAT NAPSQVSLST ETAADQGFHP TTDSRAVLNS STPATTSLQN DPSGILGSSL PPQDRNTLNV PSLDCIQQHP
601: QFGDTCADTA DLSGDSTATN THDVPSNTSI ENSALKNKSS DEVGSQLTEP SASGSAEPLG LGGGLIPKKR SRAVKPSGST TDPGRDSSSV SQNQDPISVA
701: QQFLEGFASR NTNASRSNAP ASGPPSSVPQ PTEVPLRRQG GGQPDIGSMI SGMLNNPVFS NILSNVATQA GGSSADLRGV MEGLQSPAVV DTISSIVQNV
801: DEQDLGAMFG SGRGQGGLDL SRMLQQMMPV VSQALGGAGG RSAGANSRQS RSWPQRIDSG GGNVPASSSS QIDLHQARES IEQHESPENI FSSVLETAAQ
901: AYGEDDSIQG MIEELASDQE LTDEYLKFLV EQVRQRVQSE SQSTSQP
101: QNSSGAPEGN THANVNVTGN EGLLDDISRS VRDLLGSLGV AMSGGVTNTA FSVPLTTAPE GPNNVPGRTQ PMNPAQPGFS VLNHQIQVTQ LQPPGAIPRN
201: MIIPDSLTTL SEYMDRIDQV LQNNGAPPSR DSESQQQPTV DDANVNPRYP SPDVLASVIE RAQQLLGGSA ASALSHIAQR IRQDGETADA SLRREIQTES
301: VQLGISMQHL GAMFFELGRT MMMLRTGRSP SEAFVNSGPA VYINSTGPNP IMVQPSYQNT PPFGVSNIPV MGGISGAFGI VDPSRSSGFG DPFRRMNVPS
401: TGASATSGSA AGTTTTSEGA INGNRQDAAR TQGGNPPGHP AATRGLPTRT VVAAVPARSS VEAPNHVFSV ILPVQVRGQV AVPTQSSQGS QTAVGNGAQG
501: NSTSAVPQAS VGGVSGVPPI VAQVANALAT NAPSQVSLST ETAADQGFHP TTDSRAVLNS STPATTSLQN DPSGILGSSL PPQDRNTLNV PSLDCIQQHP
601: QFGDTCADTA DLSGDSTATN THDVPSNTSI ENSALKNKSS DEVGSQLTEP SASGSAEPLG LGGGLIPKKR SRAVKPSGST TDPGRDSSSV SQNQDPISVA
701: QQFLEGFASR NTNASRSNAP ASGPPSSVPQ PTEVPLRRQG GGQPDIGSMI SGMLNNPVFS NILSNVATQA GGSSADLRGV MEGLQSPAVV DTISSIVQNV
801: DEQDLGAMFG SGRGQGGLDL SRMLQQMMPV VSQALGGAGG RSAGANSRQS RSWPQRIDSG GGNVPASSSS QIDLHQARES IEQHESPENI FSSVLETAAQ
901: AYGEDDSIQG MIEELASDQE LTDEYLKFLV EQVRQRVQSE SQSTSQP
001: MEDQPINQCS SSTNASEKTP ESTLELNIKT LDSRTYTFQV NKNETVLLFK EKIASETGVP VGQQRLIFRG RVLKDDHPLS EYHLENGHTL HLIVRQPAES
101: APSSGTPSQG ATANDGNNTN GGPSRNGRHV SHSVVLGSFN VGDQTEGIVP DLSRVIGAVL NSFGVSGQLP TNHSTNGTQS SMPSNQSSNA PPGNTSDGEP
201: GIGGQSQATG HSQPRQAFPG VSFQTSMPRV VQIPVTAATT IPIPSFLTPI PDSLDTLMEF INRMEQALSQ NGYQPDTSSA GSGGRPREEL PRNRRGAATP
301: EALSVVLRNA QHLLSGLGVS SLSHIAGRLE QDGSSSDPTL RSQIQTEAVQ VGLAMQHLGA LLLELGRTIL TLRMAPSPEL SYVNAGPAVY ISPSGPNPIM
401: VQPFPHQISP LFTGATVSSN PLTGPVGLGT AQRHINIHIH AGTSGSPMLS SVGNQRSNGE GGQGDRDSNT SSVPAAVPSH STGENVSAGV QPGLGDDVSV
501: AQINARIRDM VNIMQGRDQI PSGIESLERD MSTGHGVATA MPEQPTNIAT TCAPESSSGS LHDLPSERSN SVCQNEKDLG GDLEHPARAK DTSCTTGQSS
601: APSGDATGDA KETNKATPEV ATATPLGLGL GGLDRKKRSK QPKVSGKTED SGTSATLEGV QQSSGTSGQQ LLQSLFSGSS RSDETGLRRG QGSDDRVDVS
701: SAMSQVLESP VLDGLLAGVS RQAGVDSPNM LRNMLQQFTQ NPQIMNTVQQ IAQQVDGQEI ENMMSGGAQG EGGGFDFSRM VQQMMPLVSR AFSQGGPLPH
801: PATIQPDDRQ PSQVNVQSMA QMIEHSDPPE DVFRAMVENA AISQDELVNE LCCDEALSQE YAELLRRDIE GRLKDDQGL
101: APSSGTPSQG ATANDGNNTN GGPSRNGRHV SHSVVLGSFN VGDQTEGIVP DLSRVIGAVL NSFGVSGQLP TNHSTNGTQS SMPSNQSSNA PPGNTSDGEP
201: GIGGQSQATG HSQPRQAFPG VSFQTSMPRV VQIPVTAATT IPIPSFLTPI PDSLDTLMEF INRMEQALSQ NGYQPDTSSA GSGGRPREEL PRNRRGAATP
301: EALSVVLRNA QHLLSGLGVS SLSHIAGRLE QDGSSSDPTL RSQIQTEAVQ VGLAMQHLGA LLLELGRTIL TLRMAPSPEL SYVNAGPAVY ISPSGPNPIM
401: VQPFPHQISP LFTGATVSSN PLTGPVGLGT AQRHINIHIH AGTSGSPMLS SVGNQRSNGE GGQGDRDSNT SSVPAAVPSH STGENVSAGV QPGLGDDVSV
501: AQINARIRDM VNIMQGRDQI PSGIESLERD MSTGHGVATA MPEQPTNIAT TCAPESSSGS LHDLPSERSN SVCQNEKDLG GDLEHPARAK DTSCTTGQSS
601: APSGDATGDA KETNKATPEV ATATPLGLGL GGLDRKKRSK QPKVSGKTED SGTSATLEGV QQSSGTSGQQ LLQSLFSGSS RSDETGLRRG QGSDDRVDVS
701: SAMSQVLESP VLDGLLAGVS RQAGVDSPNM LRNMLQQFTQ NPQIMNTVQQ IAQQVDGQEI ENMMSGGAQG EGGGFDFSRM VQQMMPLVSR AFSQGGPLPH
801: PATIQPDDRQ PSQVNVQSMA QMIEHSDPPE DVFRAMVENA AISQDELVNE LCCDEALSQE YAELLRRDIE GRLKDDQGL
Arabidopsis Description
AT5g42220/K5J14_2 [Source:UniProtKB/TrEMBL;Acc:Q8L745]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.