Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
plasma membrane: 23508561 mitochondrion: 27297264 plasma membrane: 27341663 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG25466 | Sorghum | nucleus | 75.91 | 72.54 |
| TraesCS6A01G013800.1 | Wheat | plastid | 8.84 | 51.61 |
| Os07t0498800-01 | Rice | cytosol | 33.7 | 45.52 |
| TraesCS6B01G020900.1 | Wheat | nucleus | 44.86 | 41.68 |
| TraesCS6A01G013700.2 | Wheat | nucleus | 44.53 | 41.59 |
| TraesCS6D01G017100.2 | Wheat | nucleus | 44.2 | 40.82 |
| HORVU6Hr1G002580.6 | Barley | plastid | 44.2 | 37.7 |
| PGSC0003DMT400025616 | Potato | plastid | 21.99 | 29.44 |
| Solyc04g082160.2.1 | Tomato | nucleus | 26.41 | 27.89 |
| Bra027974.1-P | Field mustard | nucleus | 25.3 | 27.86 |
| CDY42355 | Canola | nucleus | 25.08 | 27.75 |
| CDX95198 | Canola | nucleus | 14.14 | 27.65 |
| GSMUA_Achr5P18990_001 | Banana | cytosol | 30.5 | 26.85 |
| KRH17506 | Soybean | nucleus | 26.85 | 25.96 |
| KRH06004 | Soybean | nucleus | 26.96 | 25.96 |
| CDX95199 | Canola | nucleus | 9.72 | 25.43 |
| VIT_09s0054g01880.t01 | Wine grape | nucleus | 26.19 | 25.08 |
| AT5G42220.1 | Thale cress | nucleus | 23.98 | 24.69 |
| Zm00001d001962_P014 | Maize | cytosol | 14.92 | 19.94 |
Protein Annotations
| EnsemblPlants:Zm00001d052721_P001 | EnsemblPlants:Zm00001d052721_T001 | EnsemblPlantsGene:Zm00001d052721 | PANTHER:PTHR15204 | PANTHER:PTHR15204:SF5 | ProteinID:AQK57832.1 |
| SEG:seg | UniParc:UPI0008432740 | UniProt:A0A1D6QJ59 | MapMan:35.1 | : | : |
Description
Ubiquitin family protein
Coordinates
chr4:+:198787191..198796324
Molecular Weight (calculated)
93600.8 Da
IEP (calculated)
4.928
GRAVY (calculated)
-0.394
Length
905 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEDASHGAS SSTVIPADGP ESTIEINIKT LDSQVHKLRV DKNLRLAIRW RADVNMCVMQ WFGRATEGQT SSGASEGNTN ANVNVTGNGG LLDDISRSVR
101: DLLGSLGVAM SGGVTNTAFS VPLTSTPEGP NNVPGRTQPM NPAQPGFSVL NHQIQVTQLH PPGAIPRNMI IPDSLTTLSE YMDRIDRVLQ NNGVPPSRDS
201: ESQQQPTVDD ANANPRYPSA DVLASVIERA QQLLGGSAAS ALSRIAQRIR QDGGTADASL RREIQTESVQ LGISMQHLGA MFFELGRTMM MLRTGQSPSE
301: AFVNSGPAVY INSTGPNPIM VQPSFQNTPP FGVSNIPVLG GISGAFGIVD PSRHMNIPSN GASATSGSAA GTTTGSEGAI HGNRQDAART QGGNPPGFLA
401: ATRGLPTRTV VAAVPARSSG EAPNHIFSVI LPVQVRGQVV VPNQSSQGSQ TAVGNGAQGN STSAIPQASV GGVSGVPLIA AQVANALANA PSQVSLSTQS
501: AADQGFHLTT DNRADVLSSS TPATTPQNGP SGTSGSSLPS QDRNTLNVPS LDSIQQHPQL GDTCADTADL SGDATAISTH DAPSNPSVDS SVLKNKSSDE
601: VGSQTTEPSA SGSAEPLGLG GGLIPIPKRR SKAVKPSGST TDPSRDLSSV SQNQDPISVA QQFLEGFASR NTNGSRSNTL SSGPPSSVPQ ATEVPPRRQG
701: GGQPDIGSMI SGMLNNPVFS NMLSNVATQA GGSSADLKSV MEGLQSPAIV DTISNIVQNV DEQDLGAMFG SGRGQGGMDL SRMLQQMMPV VSQALGGAGG
801: RSAGANGGQH RSRPQRIDGE GNAPASSSQI DLHEARQSIE QHESPENIFR AVLETAAQAH GEDNSIQGMV EELATDQELA DDYMKLLMEQ VRQRIQSESQ
901: SGSQP
101: DLLGSLGVAM SGGVTNTAFS VPLTSTPEGP NNVPGRTQPM NPAQPGFSVL NHQIQVTQLH PPGAIPRNMI IPDSLTTLSE YMDRIDRVLQ NNGVPPSRDS
201: ESQQQPTVDD ANANPRYPSA DVLASVIERA QQLLGGSAAS ALSRIAQRIR QDGGTADASL RREIQTESVQ LGISMQHLGA MFFELGRTMM MLRTGQSPSE
301: AFVNSGPAVY INSTGPNPIM VQPSFQNTPP FGVSNIPVLG GISGAFGIVD PSRHMNIPSN GASATSGSAA GTTTGSEGAI HGNRQDAART QGGNPPGFLA
401: ATRGLPTRTV VAAVPARSSG EAPNHIFSVI LPVQVRGQVV VPNQSSQGSQ TAVGNGAQGN STSAIPQASV GGVSGVPLIA AQVANALANA PSQVSLSTQS
501: AADQGFHLTT DNRADVLSSS TPATTPQNGP SGTSGSSLPS QDRNTLNVPS LDSIQQHPQL GDTCADTADL SGDATAISTH DAPSNPSVDS SVLKNKSSDE
601: VGSQTTEPSA SGSAEPLGLG GGLIPIPKRR SKAVKPSGST TDPSRDLSSV SQNQDPISVA QQFLEGFASR NTNGSRSNTL SSGPPSSVPQ ATEVPPRRQG
701: GGQPDIGSMI SGMLNNPVFS NMLSNVATQA GGSSADLKSV MEGLQSPAIV DTISNIVQNV DEQDLGAMFG SGRGQGGMDL SRMLQQMMPV VSQALGGAGG
801: RSAGANGGQH RSRPQRIDGE GNAPASSSQI DLHEARQSIE QHESPENIFR AVLETAAQAH GEDNSIQGMV EELATDQELA DDYMKLLMEQ VRQRIQSESQ
901: SGSQP
001: MEDQPINQCS SSTNASEKTP ESTLELNIKT LDSRTYTFQV NKNETVLLFK EKIASETGVP VGQQRLIFRG RVLKDDHPLS EYHLENGHTL HLIVRQPAES
101: APSSGTPSQG ATANDGNNTN GGPSRNGRHV SHSVVLGSFN VGDQTEGIVP DLSRVIGAVL NSFGVSGQLP TNHSTNGTQS SMPSNQSSNA PPGNTSDGEP
201: GIGGQSQATG HSQPRQAFPG VSFQTSMPRV VQIPVTAATT IPIPSFLTPI PDSLDTLMEF INRMEQALSQ NGYQPDTSSA GSGGRPREEL PRNRRGAATP
301: EALSVVLRNA QHLLSGLGVS SLSHIAGRLE QDGSSSDPTL RSQIQTEAVQ VGLAMQHLGA LLLELGRTIL TLRMAPSPEL SYVNAGPAVY ISPSGPNPIM
401: VQPFPHQISP LFTGATVSSN PLTGPVGLGT AQRHINIHIH AGTSGSPMLS SVGNQRSNGE GGQGDRDSNT SSVPAAVPSH STGENVSAGV QPGLGDDVSV
501: AQINARIRDM VNIMQGRDQI PSGIESLERD MSTGHGVATA MPEQPTNIAT TCAPESSSGS LHDLPSERSN SVCQNEKDLG GDLEHPARAK DTSCTTGQSS
601: APSGDATGDA KETNKATPEV ATATPLGLGL GGLDRKKRSK QPKVSGKTED SGTSATLEGV QQSSGTSGQQ LLQSLFSGSS RSDETGLRRG QGSDDRVDVS
701: SAMSQVLESP VLDGLLAGVS RQAGVDSPNM LRNMLQQFTQ NPQIMNTVQQ IAQQVDGQEI ENMMSGGAQG EGGGFDFSRM VQQMMPLVSR AFSQGGPLPH
801: PATIQPDDRQ PSQVNVQSMA QMIEHSDPPE DVFRAMVENA AISQDELVNE LCCDEALSQE YAELLRRDIE GRLKDDQGL
101: APSSGTPSQG ATANDGNNTN GGPSRNGRHV SHSVVLGSFN VGDQTEGIVP DLSRVIGAVL NSFGVSGQLP TNHSTNGTQS SMPSNQSSNA PPGNTSDGEP
201: GIGGQSQATG HSQPRQAFPG VSFQTSMPRV VQIPVTAATT IPIPSFLTPI PDSLDTLMEF INRMEQALSQ NGYQPDTSSA GSGGRPREEL PRNRRGAATP
301: EALSVVLRNA QHLLSGLGVS SLSHIAGRLE QDGSSSDPTL RSQIQTEAVQ VGLAMQHLGA LLLELGRTIL TLRMAPSPEL SYVNAGPAVY ISPSGPNPIM
401: VQPFPHQISP LFTGATVSSN PLTGPVGLGT AQRHINIHIH AGTSGSPMLS SVGNQRSNGE GGQGDRDSNT SSVPAAVPSH STGENVSAGV QPGLGDDVSV
501: AQINARIRDM VNIMQGRDQI PSGIESLERD MSTGHGVATA MPEQPTNIAT TCAPESSSGS LHDLPSERSN SVCQNEKDLG GDLEHPARAK DTSCTTGQSS
601: APSGDATGDA KETNKATPEV ATATPLGLGL GGLDRKKRSK QPKVSGKTED SGTSATLEGV QQSSGTSGQQ LLQSLFSGSS RSDETGLRRG QGSDDRVDVS
701: SAMSQVLESP VLDGLLAGVS RQAGVDSPNM LRNMLQQFTQ NPQIMNTVQQ IAQQVDGQEI ENMMSGGAQG EGGGFDFSRM VQQMMPLVSR AFSQGGPLPH
801: PATIQPDDRQ PSQVNVQSMA QMIEHSDPPE DVFRAMVENA AISQDELVNE LCCDEALSQE YAELLRRDIE GRLKDDQGL
Arabidopsis Description
AT5g42220/K5J14_2 [Source:UniProtKB/TrEMBL;Acc:Q8L745]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.