Factsheet for Zm00001d050493_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d052230_P001
Zm00001d053989_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48690.1	Zm00001d053989_P003	AT4G10930.1	21798944
AT3G48690.1	Zm00001d052230_P001	AT5G10110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG25323	Sorghum	cytosol	92.05	91.21
Zm00001d031805_P001	Maize	cytosol	70.95	85.61
Os08t0475400-02	Rice	cytosol, plasma membrane	82.26	82.26
TraesCS5D01G444200.1	Wheat	cytosol	80.12	78.92
TraesCS5A01G437300.1	Wheat	cytosol	79.51	78.31
TraesCS5B01G439900.2	Wheat	cytosol	79.82	78.14
TraesCS5A01G450100.1	Wheat	cytosol	75.23	77.12
Zm00001d005910_P001	Maize	cytosol	56.88	56.88
GSMUA_Achr7P18960_001	Banana	cytosol	53.52	54.01
Zm00001d020744_P001	Maize	cytosol	45.26	50.17
Solyc01g108570.2.1	Tomato	cytosol, extracellular	42.81	45.16
VIT_03s0063g00750.t01	Wine grape	cytosol	44.34	44.89
PGSC0003DMT400091080	Potato	cytosol	42.51	44.55
Zm00001d020707_P001	Maize	cytosol, extracellular	38.84	44.41
VIT_03s0063g00800.t01	Wine grape	cytosol	40.67	44.33
Zm00001d044921_P001	Maize	cytosol, extracellular	44.65	44.24
Solyc01g108560.2.1	Tomato	cytosol, plastid	40.67	44.19
PGSC0003DMT400066392	Potato	cytosol	42.2	44.09
VIT_03s0063g00780.t01	Wine grape	cytosol, peroxisome, plastid	40.37	44.0
Solyc01g108580.2.1	Tomato	cytosol	41.9	43.91
Zm00001d020732_P001	Maize	plastid	41.59	43.87
PGSC0003DMT400066389	Potato	cytosol	39.14	43.84
Solyc01g108540.2.1	Tomato	cytosol	41.28	43.69
VIT_03s0063g00720.t01	Wine grape	cytosol	43.12	43.65
VIT_03s0063g00700.t01	Wine grape	cytosol	43.12	43.65
KRH50256	Soybean	cytosol	42.2	43.4
PGSC0003DMT400066386	Potato	cytosol	41.28	43.27
KRH71162	Soybean	cytosol, nucleus	44.04	43.24
VIT_03s0063g00790.t01	Wine grape	cytosol	39.76	43.19
Zm00001d020742_P001	Maize	cytosol	37.92	43.06
VIT_03s0063g00740.t01	Wine grape	cytosol	42.2	42.86
Zm00001d031804_P001	Maize	cytosol	42.51	42.38
VIT_03s0063g00820.t01	Wine grape	cytosol	38.84	42.19
VIT_03s0063g00730.t01	Wine grape	cytosol	41.28	42.19
KRH50255	Soybean	cytosol	39.14	42.11
PGSC0003DMT400066385	Potato	cytosol	39.14	41.69
VIT_03s0063g00810.t01	Wine grape	cytosol	39.76	41.53
Zm00001d020740_P001	Maize	cytosol	41.9	41.52
KRH71164	Soybean	cytosol	38.53	41.45
Zm00001d020737_P001	Maize	extracellular	39.76	41.27
Bra025117.1-P	Field mustard	cytosol	38.23	41.12
Bra040667.1-P	Field mustard	cytosol	40.06	41.07
CDY20870	Canola	cytosol	40.06	41.07
KRH71163	Soybean	cytosol	37.92	41.06
Solyc01g108530.2.1	Tomato	cytosol	38.53	41.04
Zm00001d025549_P001	Maize	cytosol	40.37	40.99
PGSC0003DMT400066384	Potato	cytosol	25.69	40.98
Zm00001d037288_P001	Maize	cytosol, extracellular	38.84	40.84
CDY29339	Canola	cytosol	39.76	40.75
PGSC0003DMT400088862	Potato	cytosol	42.81	40.7
KRH71161	Soybean	cytosol	33.95	40.66
Zm00001d037180_P001	Maize	cytosol, extracellular	40.37	40.62
CDY28094	Canola	cytosol	39.76	40.5
Zm00001d016895_P001	Maize	cytosol	41.28	40.42
Bra018807.1-P	Field mustard	cytosol	40.06	40.18
Solyc10g050880.1.1	Tomato	cytosol	38.23	40.06
AT3G48690.1	Thale cress	cytosol	39.45	39.81
Zm00001d005905_P001	Maize	endoplasmic reticulum, golgi	42.81	39.77
CDX77920	Canola	cytosol	37.92	39.74
VIT_03s0063g00830.t01	Wine grape	cytosol	36.7	39.74
CDY51035	Canola	cytosol	39.45	39.57
AT1G49660.1	Thale cress	cytosol	38.53	39.5
Zm00001d050837_P001	Maize	cytosol	40.06	39.46
AT2G03550.1	Thale cress	cytosol	37.61	39.42
Zm00001d020738_P001	Maize	plastid	39.76	39.04
CDX83045	Canola	cytosol	38.23	38.58
Zm00001d020736_P001	Maize	endoplasmic reticulum, vacuole	40.67	38.44
CDY37916	Canola	cytosol	37.92	38.39
AT1G19190.1	Thale cress	cytosol	37.31	38.36
Bra029913.1-P	Field mustard	cytosol	38.23	38.34
Bra019558.1-P	Field mustard	cytosol	37.61	38.08
Zm00001d031801_P001	Maize	endoplasmic reticulum	41.28	38.03
AT3G48700.1	Thale cress	cytosol	38.23	37.99
CDX68486	Canola	cytosol	37.31	37.77
CDY67024	Canola	cytosol	37.31	37.77
CDY51033	Canola	cytosol	36.39	37.19
CDY28098	Canola	cytosol	36.39	36.96
PGSC0003DMT400066383	Potato	cytosol	34.25	36.84
Bra029912.1-P	Field mustard	cytosol	36.39	36.84
CDY41024	Canola	peroxisome	36.39	36.84
AT1G49640.1	Thale cress	cytosol	35.47	36.83
Bra018809.1-P	Field mustard	cytosol	35.47	36.71
KRH50257	Soybean	cytosol	36.39	36.62
Solyc01g108520.1.1	Tomato	endoplasmic reticulum, extracellular	35.17	36.51
Zm00001d050479_P001	Maize	extracellular, plasma membrane, vacuole	41.9	36.15
Bra018808.1-P	Field mustard	plastid	41.28	35.43
CDY02986	Canola	cytosol	38.23	35.41
CDY51034	Canola	plastid	40.98	35.26
CDY28095	Canola	plastid	40.98	35.26
Zm00001d020741_P001	Maize	golgi, mitochondrion, vacuole	40.67	35.09
CDX96674	Canola	cytosol	34.86	35.08
AT1G49650.1	Thale cress	mitochondrion	40.06	35.03
Bra025714.1-P	Field mustard	cytosol	25.38	34.87
KRH71160	Soybean	nucleus	41.59	34.61
CDY16521	Canola	mitochondrion	40.06	34.47
Bra016519.1-P	Field mustard	cytosol	34.25	34.25
Bra014213.1-P	Field mustard	mitochondrion	39.76	34.21
CDY32845	Canola	mitochondrion	37.61	33.61
Zm00001d005909_P001	Maize	plasma membrane	36.7	33.24
VIT_03s0063g00770.t01	Wine grape	plastid	41.28	32.45

Protein Annotations

EntrezGene:100284217	Gene3D:3.40.50.1820	MapMan:35.1	InterPro:AB_hydrolase	InterPro:AB_hydrolase_3	ProteinID:AQK52602.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:IPR029058
UniProt:K7U051	PFAM:PF07859	PANTHER:PTHR23024	PANTHER:PTHR23024:SF150	SUPFAM:SSF53474	UniParc:UPI000221B9DB
EnsemblPlantsGene:Zm00001d050493	EnsemblPlants:Zm00001d050493_P001	EnsemblPlants:Zm00001d050493_T001	:	:	:

Description

Gibberellin receptor GID1L2

Coordinates

chr4:-:93017163..93018146

Molecular Weight (calculated)

35527.0 Da

IEP (calculated)

4.934

GRAVY (calculated)

0.001

Length

327 amino acids

Sequence
(BLAST)

001: MAAAPVAPPL ASTDDEIVYE SMPCIRVYKK RVERYFGTEF VAASTDAATG VASRDVVISP NVSARLYLPR LDDESAKLPI FVYYHGGGFC LGSAFNPTFH
101: SYFNSFAGLA NVLVVSVEYR LAPEHPVPAA YADSWEALAW VVSHLAAAGD NVRDPWIAGH ADFSRLYLGG ESAGSNIAHH MAMRVAAEGL AHDARIQGLV
201: MVHPYFLGTD KVPSDDISLE VRESLGSLWR VMCPTTTGED DPLINPFVDG APPLASLACG RVLVCIGEGD VLRDRGRAYY DRLRASGWPG EAEIWQAPNK
301: GHTFHLLEPC CDEAVAQDKV ISDFLNR

Best Arabidopsis Sequence Match ( AT1G47480.1 )
(BLAST)

001: MESTKKQVSL ELLPWLVVHT DGTVERLAGT EVCPPGLDPI TGVFSKDIII EPKTGLSARI YRPFSIQPGQ KIPLMLYFHG GAFLISSTSF PSYHTSLNKI
101: VNQANVIAVS VNYRLAPEHP LPTAYEDSWT ALKNIQAINE PWINDYADLD SLFLVGDSAG ANISHHLAFR AKQSDQTLKI KGIGMIHPYF WGTQPIGAEI
201: KDEARKQMVD GWWEFVCPSE KGSDDPWINP FADGSPDLGG LGCERVMITV AEKDILNERG KMYYERLVKS EWKGKVEIME TKEKDHVFHI FEPDCDEAME
301: MVRCLALFIN QVEA

Arabidopsis Description

CXE2Probable carboxylesterase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SX78]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.