Factsheet for Zm00001d050837_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, vacuole
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d052230_P001
Zm00001d053989_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48690.1	Zm00001d053989_P003	AT4G10930.1	21798944
AT3G48690.1	Zm00001d052230_P001	AT5G10110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016895_P001	Maize	cytosol	90.96	90.42
OQU85176	Sorghum	plastid	89.46	87.1
TraesCS3B01G141200.1	Wheat	cytosol	74.4	78.41
TraesCS3D01G124000.1	Wheat	cytosol	73.19	77.64
TraesCS5B01G059800.1	Wheat	cytosol	71.39	76.21
TraesCS5D01G068400.1	Wheat	cytosol	70.48	75.24
Os02t0567800-01	Rice	cytosol	72.29	75.0
HORVU3Hr1G022640.1	Barley	mitochondrion	71.99	65.48
Zm00001d025549_P001	Maize	cytosol	59.04	60.87
GSMUA_Achr6P04360_001	Banana	cytosol	43.98	49.83
Zm00001d020732_P001	Maize	plastid	46.39	49.68
GSMUA_Achr3P06860_001	Banana	cytosol	36.45	49.39
Zm00001d020737_P001	Maize	extracellular	45.78	48.25
Zm00001d037288_P001	Maize	cytosol, extracellular	44.28	47.27
GSMUA_Achr6P04230_001	Banana	cytosol	32.83	46.58
Zm00001d020707_P001	Maize	cytosol, extracellular	39.16	45.45
Zm00001d020738_P001	Maize	plastid	45.18	45.05
GSMUA_Achr7P12950_001	Banana	cytosol	43.37	44.58
VIT_03s0063g00750.t01	Wine grape	cytosol	42.77	43.96
Zm00001d031804_P001	Maize	cytosol	43.37	43.9
KRH50255	Soybean	cytosol	39.46	43.09
Zm00001d037180_P001	Maize	cytosol, extracellular	41.87	42.77
Solyc01g108540.2.1	Tomato	cytosol	39.76	42.72
PGSC0003DMT400066386	Potato	cytosol	40.06	42.63
Zm00001d044921_P001	Maize	cytosol, extracellular	42.17	42.42
PGSC0003DMT400091080	Potato	cytosol	39.76	42.31
Zm00001d005910_P001	Maize	cytosol	41.57	42.2
KRH71164	Soybean	cytosol	38.55	42.11
KRH71162	Soybean	cytosol, nucleus	42.17	42.04
Solyc01g108570.2.1	Tomato	cytosol, extracellular	39.16	41.94
KRH71163	Soybean	cytosol	37.65	41.39
Solyc01g108580.2.1	Tomato	cytosol	38.86	41.35
PGSC0003DMT400066392	Potato	cytosol	38.86	41.21
Zm00001d020740_P001	Maize	cytosol	40.96	41.21
Solyc01g108560.2.1	Tomato	cytosol, plastid	37.35	41.2
VIT_03s0063g00820.t01	Wine grape	cytosol	37.35	41.2
KRH50256	Soybean	cytosol	39.46	41.2
VIT_03s0063g00700.t01	Wine grape	cytosol	40.06	41.18
PGSC0003DMT400066384	Potato	cytosol	25.3	40.98
VIT_03s0063g00720.t01	Wine grape	cytosol	39.76	40.87
VIT_03s0063g00740.t01	Wine grape	cytosol	39.46	40.68
Bra025117.1-P	Field mustard	cytosol	37.05	40.46
Zm00001d005909_P001	Maize	plasma membrane	43.98	40.44
VIT_03s0063g00830.t01	Wine grape	cytosol	36.75	40.4
PGSC0003DMT400066385	Potato	cytosol	37.35	40.39
VIT_03s0063g00780.t01	Wine grape	cytosol, peroxisome, plastid	36.45	40.33
Solyc01g108530.2.1	Tomato	cytosol	37.05	40.07
CDX77920	Canola	cytosol	37.65	40.06
Zm00001d050493_P001	Maize	cytosol, extracellular	39.46	40.06
VIT_03s0063g00800.t01	Wine grape	cytosol	36.14	40.0
Zm00001d031805_P001	Maize	cytosol	32.53	39.85
CDY37916	Canola	cytosol	38.55	39.63
Bra019558.1-P	Field mustard	cytosol	38.25	39.32
VIT_03s0063g00790.t01	Wine grape	cytosol	35.54	39.2
PGSC0003DMT400066389	Potato	cytosol	34.34	39.04
Zm00001d020736_P001	Maize	endoplasmic reticulum, vacuole	40.66	39.02
Zm00001d005905_P001	Maize	endoplasmic reticulum, golgi	41.27	38.92
AT3G48690.1	Thale cress	cytosol	37.95	38.89
AT2G03550.1	Thale cress	cytosol	36.45	38.78
AT3G48700.1	Thale cress	cytosol	38.25	38.6
KRH50257	Soybean	cytosol	37.65	38.46
KRH71161	Soybean	cytosol	31.63	38.46
Solyc10g050880.1.1	Tomato	cytosol	36.14	38.46
PGSC0003DMT400088862	Potato	cytosol	39.76	38.37
VIT_03s0063g00730.t01	Wine grape	cytosol	36.75	38.12
VIT_03s0063g00810.t01	Wine grape	cytosol	35.84	38.02
Zm00001d020744_P001	Maize	cytosol	33.73	37.97
CDX83045	Canola	cytosol	36.45	37.35
Bra029912.1-P	Field mustard	cytosol	36.14	37.15
CDY67024	Canola	cytosol	36.14	37.15
Bra029913.1-P	Field mustard	cytosol	36.45	37.12
CDX68486	Canola	cytosol	35.84	36.84
CDY41024	Canola	peroxisome	35.54	36.53
Bra018807.1-P	Field mustard	cytosol	35.84	36.5
CDY51035	Canola	cytosol	35.84	36.5
AT1G19190.1	Thale cress	cytosol	34.34	35.85
CDY28094	Canola	cytosol	34.64	35.83
Zm00001d031801_P001	Maize	endoplasmic reticulum	38.25	35.77
Zm00001d050479_P001	Maize	extracellular, plasma membrane, vacuole	40.66	35.62
Solyc01g108520.1.1	Tomato	endoplasmic reticulum, extracellular	33.73	35.56
Bra016519.1-P	Field mustard	cytosol	34.94	35.47
CDX96674	Canola	cytosol	34.64	35.38
Bra025714.1-P	Field mustard	cytosol	25.3	35.29
CDY02986	Canola	cytosol	37.35	35.13
AT1G49660.1	Thale cress	cytosol	33.73	35.11
CDY20870	Canola	cytosol	33.73	35.11
PGSC0003DMT400066383	Potato	cytosol	31.93	34.87
KRH71160	Soybean	nucleus	40.96	34.61
Bra040667.1-P	Field mustard	cytosol	33.13	34.48
Zm00001d020741_P001	Maize	golgi, mitochondrion, vacuole	39.16	34.3
CDY29339	Canola	cytosol	32.83	34.17
AT1G49640.1	Thale cress	cytosol	31.63	33.33
CDY28098	Canola	cytosol	32.23	33.23
CDY51033	Canola	cytosol	31.93	33.12
Zm00001d020742_P001	Maize	cytosol	28.31	32.64
Bra018809.1-P	Field mustard	cytosol	30.72	32.28
Bra018808.1-P	Field mustard	plastid	35.24	30.71
CDY28095	Canola	plastid	34.94	30.53
CDY51034	Canola	plastid	34.94	30.53
VIT_03s0063g00770.t01	Wine grape	plastid	37.05	29.57
AT1G49650.1	Thale cress	mitochondrion	32.83	29.14
CDY16521	Canola	mitochondrion	32.83	28.68
Bra014213.1-P	Field mustard	mitochondrion	32.53	28.42
CDY32845	Canola	mitochondrion	31.33	28.42
GSMUA_Achr5P24460_001	Banana	cytosol, endoplasmic reticulum, peroxisome	41.27	22.24

Protein Annotations

EntrezGene:100283652	Gene3D:3.40.50.1820	MapMan:35.1	InterPro:AB_hydrolase	InterPro:AB_hydrolase_3	ProteinID:AQK53131.1
UniProt:B6TKC8	EMBL:EU965443	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	InterPro:IPR029058	PFAM:PF07859	PANTHER:PTHR23024	PANTHER:PTHR23024:SF180	SUPFAM:SSF53474
UniParc:UPI000182D777	EnsemblPlantsGene:Zm00001d050837	EnsemblPlants:Zm00001d050837_P001	EnsemblPlants:Zm00001d050837_T001	SEG:seg	:

Description

Gibberellin receptor GID1L2

Coordinates

chr4:+:125665547..125666545

Molecular Weight (calculated)

35305.4 Da

IEP (calculated)

5.943

GRAVY (calculated)

0.065

Length

332 amino acids

Sequence
(BLAST)

001: MASSKPLFPF PVPAPDPSDE VVREFGPLLR VYKSGRIERP LVAPPVEPGH DAATGVQSKD VHLGSYSARL YLPPVADAGA KLPVVVFVHG GGFVAESAAS
101: PNYHLFLNRL AAACPALAVS VDYRLAPEHP LPAGYDDCLA ALKWVLSAAD PWVAAHGDLA RVFVAGDSAG GNVCHYLAIH PDVVQAQQQG CPPPLKGAVL
201: IHPWFWGSEA VGEEPRDPAV RTMGAGLWFF ACPDANSMED PRMNPMAPAA PGLHTLACER VMVCTAEGDF LRWRGRAYAE AVAAARGGRL GQAAGVELLE
301: TMGEGHVFFL FKPDCDKAKE MLDKMAAFIN AP

Best Arabidopsis Sequence Match ( AT1G19190.1 )
(BLAST)

001: MDSEIAFDYS PRFRIFKNGG IERLVPETFV PPSLNPENGV VSKDAVYSPE KNLSLRIYLP QNSVYETGEK KIPLLVYFHG GGFIMETAFS PIYHTFLTSA
101: VSATDCIAVS VEYRRAPEHP IPTLYEDSWD AIQWIFTHIT RSGPEDWLNK HADFSKVFLA GDSAGANIAH HMAIRVDKEK LPPENFKISG MILFHPYFLS
201: KALIEEMEVE AMRYYERLWR IASPDSGNGV EDPWINVVGS DLTGLGCRRV LVMVAGNDVL ARGGWSYVAE LEKSGWIGKV KVMETKEEGH VFHLRDPDSE
301: NARRVLRNFA EFLKEETF

Arabidopsis Description

CXE1Probable carboxylesterase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMA7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.