Factsheet for Zm00001d005909_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
golgi 4
plasma membrane 5
endoplasmic reticulum 5
vacuole 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	vacuole

extracellular: 20408568
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d052230_P001
Zm00001d053989_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48690.1	Zm00001d053989_P003	AT4G10930.1	21798944
AT3G48690.1	Zm00001d052230_P001	AT5G10110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG35783	Sorghum	extracellular, vacuole	93.63	93.11
Os09t0461900-01	Rice	cytosol, plasma membrane	71.47	80.37
TraesCS2D01G389600.1	Wheat	cytosol	67.04	74.69
TraesCS5B01G240800.1	Wheat	extracellular, golgi	75.9	74.46
TraesCS5A01G242800.1	Wheat	extracellular, plasma membrane	75.07	73.24
HORVU2Hr1G093140.1	Barley	cytosol	65.65	73.15
TraesCS5D01G249400.1	Wheat	endoplasmic reticulum, plasma membrane	75.62	72.99
TraesCS5B01G240000.1	Wheat	cytosol	65.1	72.76
TraesCS4B01G135300.1	Wheat	cytosol	64.54	72.59
TraesCS5A01G242600.1	Wheat	cytosol	63.99	71.3
TraesCS2D01G389500.1	Wheat	cytosol	58.17	69.54
TraesCS2B01G409800.1	Wheat	cytosol	62.6	67.87
TraesCS4D01G130000.1	Wheat	extracellular, vacuole	67.04	65.05
HORVU0Hr1G013160.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	45.15	62.69
TraesCS4A01G183300.2	Wheat	extracellular, golgi	67.87	58.89
HORVU0Hr1G013200.3	Barley	plastid	57.89	55.88
GSMUA_Achr6P04360_001	Banana	cytosol	39.61	48.81
GSMUA_Achr7P12950_001	Banana	cytosol	43.21	48.3
GSMUA_Achr6P04230_001	Banana	cytosol	31.02	47.86
GSMUA_Achr3P06860_001	Banana	cytosol	31.58	46.53
Zm00001d020707_P001	Maize	cytosol, extracellular	36.57	46.15
VIT_03s0063g00740.t01	Wine grape	cytosol	39.61	44.41
Zm00001d037288_P001	Maize	cytosol, extracellular	38.23	44.37
Zm00001d005905_P001	Maize	endoplasmic reticulum, golgi	43.21	44.32
VIT_03s0063g00750.t01	Wine grape	cytosol	39.61	44.27
Zm00001d050837_P001	Maize	cytosol	40.44	43.98
Zm00001d020732_P001	Maize	plastid	37.67	43.87
Zm00001d020737_P001	Maize	extracellular	38.23	43.81
Zm00001d016895_P001	Maize	cytosol	40.44	43.71
Zm00001d020736_P001	Maize	endoplasmic reticulum, vacuole	41.83	43.64
Zm00001d037180_P001	Maize	cytosol, extracellular	38.78	43.08
Zm00001d005910_P001	Maize	cytosol	38.23	42.2
KRH71161	Soybean	cytosol	31.86	42.12
Zm00001d020740_P001	Maize	cytosol	38.23	41.82
Zm00001d020738_P001	Maize	plastid	38.5	41.74
Zm00001d025549_P001	Maize	cytosol	37.12	41.61
PGSC0003DMT400066384	Potato	cytosol	23.55	41.46
KRH50255	Soybean	cytosol	34.9	41.45
KRH71164	Soybean	cytosol	34.9	41.45
Zm00001d050479_P001	Maize	extracellular, plasma membrane, vacuole	43.49	41.42
Zm00001d031801_P001	Maize	endoplasmic reticulum	40.72	41.41
PGSC0003DMT400066386	Potato	cytosol	35.73	41.35
PGSC0003DMT400091080	Potato	cytosol	35.73	41.35
Solyc01g108540.2.1	Tomato	cytosol	35.18	41.1
Solyc01g108570.2.1	Tomato	cytosol, extracellular	35.18	40.97
PGSC0003DMT400066392	Potato	cytosol	35.46	40.89
Zm00001d031804_P001	Maize	cytosol	37.12	40.85
AT2G03550.1	Thale cress	cytosol	35.18	40.71
Zm00001d020741_P001	Maize	golgi, mitochondrion, vacuole	42.66	40.63
VIT_03s0063g00730.t01	Wine grape	cytosol	36.01	40.62
Solyc01g108560.2.1	Tomato	cytosol, plastid	33.8	40.53
VIT_03s0063g00820.t01	Wine grape	cytosol	33.8	40.53
Solyc01g108580.2.1	Tomato	cytosol	34.9	40.38
KRH50256	Soybean	cytosol	35.46	40.25
Solyc01g108530.2.1	Tomato	cytosol	34.07	40.07
VIT_03s0063g00800.t01	Wine grape	cytosol	33.24	40.0
Zm00001d044921_P001	Maize	cytosol, extracellular	36.57	40.0
PGSC0003DMT400066385	Potato	cytosol	33.8	39.74
PGSC0003DMT400066389	Potato	cytosol	32.13	39.73
VIT_03s0063g00780.t01	Wine grape	cytosol, peroxisome, plastid	32.96	39.67
AT3G48690.1	Thale cress	cytosol	35.18	39.2
Bra025117.1-P	Field mustard	cytosol	32.96	39.14
Zm00001d031805_P001	Maize	cytosol	29.36	39.11
CDX77920	Canola	cytosol	33.8	39.1
VIT_03s0063g00830.t01	Wine grape	cytosol	32.69	39.07
VIT_03s0063g00720.t01	Wine grape	cytosol	34.9	39.01
VIT_03s0063g00700.t01	Wine grape	cytosol	34.63	38.7
VIT_03s0063g00810.t01	Wine grape	cytosol	33.52	38.66
AT3G48700.1	Thale cress	cytosol	35.18	38.6
VIT_03s0063g00790.t01	Wine grape	cytosol	31.86	38.21
KRH71162	Soybean	cytosol, nucleus	35.18	38.14
Zm00001d020744_P001	Maize	cytosol	31.02	37.97
CDY37916	Canola	cytosol	33.8	37.77
CDX83045	Canola	cytosol	33.8	37.65
Bra019558.1-P	Field mustard	cytosol	33.52	37.46
Bra029913.1-P	Field mustard	cytosol	33.8	37.42
KRH71163	Soybean	cytosol	31.3	37.42
CDX68486	Canola	cytosol	33.24	37.15
CDY67024	Canola	cytosol	33.24	37.15
Bra018807.1-P	Field mustard	cytosol	33.52	37.12
CDY28094	Canola	cytosol	32.96	37.07
CDY41024	Canola	peroxisome	32.96	36.84
CDY51035	Canola	cytosol	33.24	36.81
Zm00001d050493_P001	Maize	cytosol, extracellular	33.24	36.7
Bra040667.1-P	Field mustard	cytosol	32.41	36.68
Bra029912.1-P	Field mustard	cytosol	32.69	36.53
AT1G19190.1	Thale cress	cytosol	32.13	36.48
AT1G49660.1	Thale cress	cytosol	32.13	36.36
CDY29339	Canola	cytosol	32.13	36.36
Solyc10g050880.1.1	Tomato	cytosol	31.3	36.22
CDY20870	Canola	cytosol	31.86	36.05
PGSC0003DMT400088862	Potato	cytosol	34.35	36.05
CDX96674	Canola	cytosol	32.41	36.0
KRH50257	Soybean	cytosol	32.41	36.0
Bra016519.1-P	Field mustard	cytosol	32.13	35.47
CDY28098	Canola	cytosol	31.58	35.4
CDY51033	Canola	cytosol	31.3	35.31
Bra018809.1-P	Field mustard	cytosol	30.47	34.81
Solyc01g108520.1.1	Tomato	endoplasmic reticulum, extracellular	30.19	34.6
CDY02986	Canola	cytosol	33.52	34.28
Bra025714.1-P	Field mustard	cytosol	22.44	34.03
AT1G49640.1	Thale cress	cytosol	29.64	33.97
KRH71160	Soybean	nucleus	36.01	33.08
PGSC0003DMT400066383	Potato	cytosol	27.7	32.89
CDY16521	Canola	mitochondrion	34.35	32.63
Bra014213.1-P	Field mustard	mitochondrion	34.07	32.37
CDY28095	Canola	plastid	33.8	32.11
CDY32845	Canola	mitochondrion	32.41	31.97
Bra018808.1-P	Field mustard	plastid	33.52	31.76
CDY51034	Canola	plastid	33.24	31.58
AT1G49650.1	Thale cress	mitochondrion	32.13	31.02
Zm00001d020742_P001	Maize	cytosol	24.65	30.9
VIT_03s0063g00770.t01	Wine grape	plastid	34.35	29.81
GSMUA_Achr5P24460_001	Banana	cytosol, endoplasmic reticulum, peroxisome	35.46	20.78

Protein Annotations

Gene3D:3.40.50.1820	MapMan:35.1	UniProt:A0A1D6ERI3	InterPro:AB_hydrolase	InterPro:AB_hydrolase_3	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:IPR029058	ProteinID:ONM22347.1
PFAM:PF07859	PANTHER:PTHR23024	PANTHER:PTHR23024:SF171	SUPFAM:SSF53474	TMHMM:TMhelix	UniParc:UPI0002217F20
EnsemblPlantsGene:Zm00001d005909	EnsemblPlants:Zm00001d005909_P001	EnsemblPlants:Zm00001d005909_T001	SEG:seg	:	:

Description

Gibberellin receptor GID1L2

Coordinates

chr2:+:192448650..192450890

Molecular Weight (calculated)

39083.0 Da

IEP (calculated)

5.966

GRAVY (calculated)

0.064

Length

361 amino acids

Sequence
(BLAST)

001: MPKLSCRVLF AALLIASLAA LLVRFPIHRL LNPHAAMDPD SELEFEMPGV LRVYKTGRVE RFDGTETVPP CPDGDPANGV ASKDIVLDPA AGISARLYLP
101: AGVDAGKKLP VVVFFHGGAF MVHTAASPLY HIYAASLAAA VPAVVVSVDY RLAPEHRIPA AYDDAFAALK AVIAACRADG AEAEAEPWLA AHGDASRIVL
201: AGDSAGGNMA HNVAIRLRKE GGIEGYGDMV SGVVLLYPYF WGKEPLGAEP TDPGYRAMFD PTWEFICGGK FGLDHPYVNP MASPEEWRQL GSRRVLVTTA
301: DQCWFVERAR AYAEGIKKCG WEGELEFYET KGEAHVFFLP KHGSEKAVKE LALVAEFVRR C

Best Arabidopsis Sequence Match ( AT1G19190.1 )
(BLAST)

001: MDSEIAFDYS PRFRIFKNGG IERLVPETFV PPSLNPENGV VSKDAVYSPE KNLSLRIYLP QNSVYETGEK KIPLLVYFHG GGFIMETAFS PIYHTFLTSA
101: VSATDCIAVS VEYRRAPEHP IPTLYEDSWD AIQWIFTHIT RSGPEDWLNK HADFSKVFLA GDSAGANIAH HMAIRVDKEK LPPENFKISG MILFHPYFLS
201: KALIEEMEVE AMRYYERLWR IASPDSGNGV EDPWINVVGS DLTGLGCRRV LVMVAGNDVL ARGGWSYVAE LEKSGWIGKV KVMETKEEGH VFHLRDPDSE
301: NARRVLRNFA EFLKEETF

Arabidopsis Description

CXE1Probable carboxylesterase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMA7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.