Factsheet for Zm00001d020738_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d052230_P001
Zm00001d053989_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48690.1	Zm00001d053989_P003	AT4G10930.1	21798944
AT3G48690.1	Zm00001d052230_P001	AT5G10110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG35781	Sorghum	cytosol	80.78	85.94
Zm00001d020737_P001	Maize	extracellular	80.18	84.76
Zm00001d037288_P001	Maize	cytosol, extracellular	68.17	72.99
TraesCS5D01G248500.1	Wheat	cytosol	56.16	58.99
Os09t0461700-01	Rice	cytosol	55.56	57.99
TraesCS5A01G242500.1	Wheat	plastid	55.56	54.41
Zm00001d020732_P001	Maize	plastid	49.85	53.55
TraesCS6B01G046900.1	Wheat	mitochondrion	36.34	53.07
TraesCS6A01G033400.1	Wheat	cytosol	51.95	53.07
TraesCS6D01G038600.1	Wheat	cytosol	51.35	52.62
HORVU6Hr1G005900.1	Barley	cytosol	50.75	52.48
Zm00001d020707_P001	Maize	cytosol, extracellular	45.05	52.45
TraesCS6B01G047900.1	Wheat	cytosol	50.45	51.69
GSMUA_Achr3P06860_001	Banana	cytosol	37.24	50.61
Zm00001d020740_P001	Maize	cytosol	49.55	50.0
GSMUA_Achr6P04360_001	Banana	cytosol	43.24	49.15
GSMUA_Achr6P04230_001	Banana	cytosol	33.63	47.86
Zm00001d016895_P001	Maize	cytosol	47.45	47.31
GSMUA_Achr7P12950_001	Banana	cytosol	45.35	46.75
Zm00001d025549_P001	Maize	cytosol	44.14	45.65
HORVU5Hr1G093500.4	Barley	plastid	50.45	45.28
Zm00001d050837_P001	Maize	cytosol	45.05	45.18
Zm00001d005910_P001	Maize	cytosol	44.14	44.95
Solyc01g108540.2.1	Tomato	cytosol	40.84	44.01
PGSC0003DMT400066392	Potato	cytosol	41.14	43.77
PGSC0003DMT400091080	Potato	cytosol	40.84	43.59
Solyc01g108570.2.1	Tomato	cytosol, extracellular	40.54	43.55
PGSC0003DMT400066386	Potato	cytosol	40.54	43.27
Solyc01g108560.2.1	Tomato	cytosol, plastid	39.04	43.19
PGSC0003DMT400066385	Potato	cytosol	39.64	43.0
Solyc01g108580.2.1	Tomato	cytosol	39.94	42.63
PGSC0003DMT400066389	Potato	cytosol	37.24	42.47
Zm00001d044921_P001	Maize	cytosol, extracellular	41.74	42.12
KRH71164	Soybean	cytosol	38.44	42.11
Solyc01g108530.2.1	Tomato	cytosol	38.74	42.02
Zm00001d037180_P001	Maize	cytosol, extracellular	40.84	41.85
Zm00001d031804_P001	Maize	cytosol	40.54	41.16
VIT_03s0063g00790.t01	Wine grape	cytosol	36.94	40.86
VIT_03s0063g00700.t01	Wine grape	cytosol	39.34	40.56
VIT_03s0063g00720.t01	Wine grape	cytosol	39.34	40.56
VIT_03s0063g00750.t01	Wine grape	cytosol	39.34	40.56
VIT_03s0063g00820.t01	Wine grape	cytosol	36.64	40.53
PGSC0003DMT400066384	Potato	cytosol	24.92	40.49
VIT_03s0063g00780.t01	Wine grape	cytosol, peroxisome, plastid	36.34	40.33
Zm00001d031805_P001	Maize	cytosol	32.73	40.22
KRH50255	Soybean	cytosol	36.64	40.13
AT3G48690.1	Thale cress	cytosol	39.04	40.12
VIT_03s0063g00740.t01	Wine grape	cytosol	38.74	40.06
VIT_03s0063g00730.t01	Wine grape	cytosol	38.44	40.0
KRH50256	Soybean	cytosol	38.14	39.94
PGSC0003DMT400088862	Potato	cytosol	41.14	39.83
Zm00001d050493_P001	Maize	cytosol, extracellular	39.04	39.76
AT2G03550.1	Thale cress	cytosol	36.94	39.42
Solyc10g050880.1.1	Tomato	cytosol	36.94	39.42
Zm00001d020744_P001	Maize	cytosol	34.83	39.32
VIT_03s0063g00810.t01	Wine grape	cytosol	36.94	39.3
Zm00001d031801_P001	Maize	endoplasmic reticulum	41.74	39.15
Bra025117.1-P	Field mustard	cytosol	35.74	39.14
KRH71162	Soybean	cytosol, nucleus	39.04	39.04
Zm00001d020736_P001	Maize	endoplasmic reticulum, vacuole	40.54	39.02
Zm00001d005905_P001	Maize	endoplasmic reticulum, golgi	41.14	38.92
KRH71163	Soybean	cytosol	35.14	38.74
Zm00001d005909_P001	Maize	plasma membrane	41.74	38.5
CDX77920	Canola	cytosol	36.04	38.46
Bra019558.1-P	Field mustard	cytosol	37.24	38.39
VIT_03s0063g00800.t01	Wine grape	cytosol	34.53	38.33
CDX83045	Canola	cytosol	37.24	38.27
KRH71161	Soybean	cytosol	31.23	38.1
CDX68486	Canola	cytosol	36.94	38.08
CDY37916	Canola	cytosol	36.94	38.08
VIT_03s0063g00830.t01	Wine grape	cytosol	34.53	38.08
Bra029913.1-P	Field mustard	cytosol	37.24	38.04
Zm00001d050479_P001	Maize	extracellular, plasma membrane, vacuole	43.24	37.99
AT3G48700.1	Thale cress	cytosol	36.94	37.39
Bra040667.1-P	Field mustard	cytosol	35.74	37.3
CDY20870	Canola	cytosol	35.74	37.3
CDY67024	Canola	cytosol	36.04	37.15
Bra029912.1-P	Field mustard	cytosol	35.74	36.84
AT1G19190.1	Thale cress	cytosol	35.14	36.79
CDY29339	Canola	cytosol	35.14	36.68
AT1G49660.1	Thale cress	cytosol	34.83	36.36
CDY41024	Canola	peroxisome	34.83	35.91
AT1G49640.1	Thale cress	cytosol	33.93	35.87
Solyc01g108520.1.1	Tomato	endoplasmic reticulum, extracellular	33.93	35.87
CDY28094	Canola	cytosol	34.53	35.83
Bra018807.1-P	Field mustard	cytosol	34.83	35.58
CDY51035	Canola	cytosol	34.53	35.28
CDY28098	Canola	cytosol	33.93	35.09
PGSC0003DMT400066383	Potato	cytosol	31.83	34.87
Bra018809.1-P	Field mustard	cytosol	33.03	34.81
CDX96674	Canola	cytosol	33.93	34.77
CDY51033	Canola	cytosol	33.33	34.69
Zm00001d020741_P001	Maize	golgi, mitochondrion, vacuole	39.04	34.3
Bra016519.1-P	Field mustard	cytosol	33.63	34.25
CDY16521	Canola	mitochondrion	38.44	33.68
Bra025714.1-P	Field mustard	cytosol	24.02	33.61
KRH50257	Soybean	cytosol	32.73	33.54
Bra014213.1-P	Field mustard	mitochondrion	38.14	33.42
CDY02986	Canola	cytosol	35.14	33.14
AT1G49650.1	Thale cress	mitochondrion	36.64	32.62
Zm00001d020742_P001	Maize	cytosol	27.93	32.29
CDY32845	Canola	mitochondrion	35.44	32.24
KRH71160	Soybean	nucleus	37.84	32.06
Bra018808.1-P	Field mustard	plastid	36.34	31.76
CDY51034	Canola	plastid	35.74	31.32
VIT_03s0063g00770.t01	Wine grape	plastid	38.74	31.01
CDY28095	Canola	plastid	34.83	30.53
GSMUA_Achr5P24460_001	Banana	cytosol, endoplasmic reticulum, peroxisome	39.04	21.1

Protein Annotations

EnsemblPlants:Zm00001d020738_P001	EnsemblPlants:Zm00001d020738_T001	EnsemblPlantsGene:Zm00001d020738	Gene3D:3.40.50.1820	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:AB_hydrolase	InterPro:AB_hydrolase_3	InterPro:IPR029058
PANTHER:PTHR23024	PANTHER:PTHR23024:SF185	PFAM:PF07859	ProteinID:ONM55517.1	SEG:seg	SUPFAM:SSF53474
UniParc:UPI000221F4A9	UniProt:A0A1D6I600	MapMan:35.1	:	:	:

Description

Gibberellin receptor GID1L2

Coordinates

chr7:+:130768508..130769509

Molecular Weight (calculated)

35815.2 Da

IEP (calculated)

5.345

GRAVY (calculated)

-0.059

Length

333 amino acids

Sequence
(BLAST)

001: MDPSSDIILD TPFFRIYSDR RIDRLVGTDT VPAGFDPATG VTSKDVVLDS NSGLYVRLYL PDTATGSDRY SKKFPVLVYF HGGGFVIHSA ASPPYQPFLN
101: TLAAKASLLI VSVNYRLAPE HPLPAGYEDS FRALKWAASG SGDPWLSHHG DLGRIFLAGD SSGGNFVHNV AMMAAASELR IEGAVLLHAG FAGKERIDGE
201: KPESVALTQK LWGIVCPEAT DGVDDPRMNP LAAAAPSLRS LPCERVLVCA AELDSLRARN RAYYDALAAS GWGGTVEWLE SNGKQHAFFL YDSGCGEAVE
301: LMDRLVAFFA GNLNSSCVDV TTHHTTTSGE TLR

Best Arabidopsis Sequence Match ( AT1G49640.1 )
(BLAST)

001: MESDLTTEHH LPFIRIHKNG RVERLSGNDI KPTSLNPQND VVSKDVMYSS DHNLSVRMFL PNKSRKLDTA GNKIPLLIYF HGGAYIIQSP FSPVYHNYLT
101: EVVITANCLA VSVQYRLAPE HPVPAAYDDS WSAIQWIFSH SDDWINEYAD FDRVFIAGDS AGANISHHMG IRAGKEKLSP TIKGIVMVHP GFWGKEPIDE
201: HDVQDGEVRN KIAYIWENIV SPNSVDGVND PWFNVVGSGS DVSEMGCEKV LVAVAGKDVF WRQGLAYAAK LEKSQWKGSV EVIEEEEEGH CFHLHNHNSQ
301: NASKLMQKFL EFIIS

Arabidopsis Description

CXE3Probable carboxylesterase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX92]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.