Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G013700.2 | Wheat | nucleus | 91.63 | 92.67 |
| TraesCS6B01G020900.1 | Wheat | nucleus | 89.8 | 90.35 |
| HORVU6Hr1G002580.6 | Barley | plastid | 87.04 | 80.4 |
| Os07t0498800-01 | Rice | cytosol | 36.02 | 52.69 |
| KXG25466 | Sorghum | nucleus | 46.12 | 47.73 |
| Zm00001d052721_P001 | Maize | plasma membrane | 40.82 | 44.2 |
| CDX95199 | Canola | nucleus | 12.04 | 34.1 |
| CDY42355 | Canola | nucleus | 26.84 | 32.15 |
| Bra027974.1-P | Field mustard | nucleus | 26.63 | 31.75 |
| GSMUA_Achr5P18990_001 | Banana | cytosol | 31.73 | 30.25 |
| AT5G42220.1 | Thale cress | nucleus | 26.73 | 29.81 |
| Solyc04g082160.2.1 | Tomato | nucleus | 25.41 | 29.05 |
| PGSC0003DMT400025616 | Potato | plastid | 19.39 | 28.11 |
| KRH06004 | Soybean | nucleus | 26.84 | 27.98 |
| KRH17506 | Soybean | nucleus | 26.63 | 27.88 |
| CDX95198 | Canola | nucleus | 12.55 | 26.57 |
| VIT_09s0054g01880.t01 | Wine grape | nucleus | 25.51 | 26.45 |
| TraesCS3D01G079600.2 | Wheat | cytosol | 18.78 | 26.21 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G017100.2 | EnsemblPlantsGene:TraesCS6D01G017100 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000626 | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS | InterPro:Ubiquitin_dom | PANTHER:PTHR15204 |
| PANTHER:PTHR15204:SF5 | PFAM:PF00240 | PFscan:PS50053 | PRINTS:PR00348 | ScanProsite:PS00299 | SEG:seg |
| SMART:SM00213 | SUPFAM:SSF54236 | TIGR:cd01809 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr6D:+:7099661..7107237
Molecular Weight (calculated)
100917.0 Da
IEP (calculated)
4.537
GRAVY (calculated)
-0.320
Length
980 amino acids
Sequence
(BLAST)
(BLAST)
001: MALPSTSIVN GMADDGASGA GGSTARDGAD GLEPATIEIN IKTLESQVHK LRVDKNETVL NLKEKIVDVA GIPVEQQRLI FRGRVLKDDH LLSEYHLEDG
101: YTLHLVARRT AEGQHSSETP EANPNANVNN AGNGAMLGDY MSRETIDVMV SEGVINDIPA TVRDILGNFL GMPGGVANAT FSVPLNQPPP DGANNGRTQP
201: GQAPPGFSIL NHQIHVSQLP PSGAIPHNMV IPDSMTTLLE YINRMDQVLQ NNGVPPSTDS NAQEPPTSAT DDAYLNQSFP SPEVLASVVE RAQQLLGGSA
301: SSALSHLAQR IQTDAATADP SVRSQIQNES AQLGVAMQHL GSMLFELGRT MMTLRMGPSP INAFVNAGPA VYITPTGPSP IMVQPSFQSA PHFGVSSIPP
401: VFGVSGPFGI VDPSRANGVN IHGGASATSG PSVGSTTASA TTANGESQNA ERTQGGNPPA TRGLPPRTVV AAIPAFPGRS SVGVILPVQM RSQVAAPNQS
501: TGPQVPQTAV GNGSQPNSTY VIPQASSGSA ISSMIAQISA QVANALAANP QALASLTSSV LNPAAQGPHP TTNNGAGTVS SVTSGNTQLQ NELPGSHPGQ
601: TSLNVQPHAT GAGTVPSNAP DPSLTPQDIS TVSVSDVDSS QQHSGESAAA SLGGQMTGTR TGDVPLGMPA ENSELKSKPS DGETGESAKP TASGGSGPLG
701: LGGGLQPKRR SRVTKLSGTS SDSGEAVNTP SVPRSQEAVL MGQQALQALV SRGANVSSGS VTASPAPSST PRSAAGMPVR RPGGEGQVDL GSMLSSVLNN
801: PMFGNLMSNV AAQTGMESPA DVRNIMEDLT QNRAVMDTLS SMVQNVDAPQ RGQGGFDLAS MMQQMMPVVS QVLGGASPRR AGTDVQPRQN DREVSGAAGG
901: RSSQMDLQEA CQRIEQHDAP EDIFGAVLET AAQAYGDDES IEVMLEELAS DPELADEYMK LLLEQVGERV ESESEAKTQS
101: YTLHLVARRT AEGQHSSETP EANPNANVNN AGNGAMLGDY MSRETIDVMV SEGVINDIPA TVRDILGNFL GMPGGVANAT FSVPLNQPPP DGANNGRTQP
201: GQAPPGFSIL NHQIHVSQLP PSGAIPHNMV IPDSMTTLLE YINRMDQVLQ NNGVPPSTDS NAQEPPTSAT DDAYLNQSFP SPEVLASVVE RAQQLLGGSA
301: SSALSHLAQR IQTDAATADP SVRSQIQNES AQLGVAMQHL GSMLFELGRT MMTLRMGPSP INAFVNAGPA VYITPTGPSP IMVQPSFQSA PHFGVSSIPP
401: VFGVSGPFGI VDPSRANGVN IHGGASATSG PSVGSTTASA TTANGESQNA ERTQGGNPPA TRGLPPRTVV AAIPAFPGRS SVGVILPVQM RSQVAAPNQS
501: TGPQVPQTAV GNGSQPNSTY VIPQASSGSA ISSMIAQISA QVANALAANP QALASLTSSV LNPAAQGPHP TTNNGAGTVS SVTSGNTQLQ NELPGSHPGQ
601: TSLNVQPHAT GAGTVPSNAP DPSLTPQDIS TVSVSDVDSS QQHSGESAAA SLGGQMTGTR TGDVPLGMPA ENSELKSKPS DGETGESAKP TASGGSGPLG
701: LGGGLQPKRR SRVTKLSGTS SDSGEAVNTP SVPRSQEAVL MGQQALQALV SRGANVSSGS VTASPAPSST PRSAAGMPVR RPGGEGQVDL GSMLSSVLNN
801: PMFGNLMSNV AAQTGMESPA DVRNIMEDLT QNRAVMDTLS SMVQNVDAPQ RGQGGFDLAS MMQQMMPVVS QVLGGASPRR AGTDVQPRQN DREVSGAAGG
901: RSSQMDLQEA CQRIEQHDAP EDIFGAVLET AAQAYGDDES IEVMLEELAS DPELADEYMK LLLEQVGERV ESESEAKTQS
001: MEDQPINQCS SSTNASEKTP ESTLELNIKT LDSRTYTFQV NKNETVLLFK EKIASETGVP VGQQRLIFRG RVLKDDHPLS EYHLENGHTL HLIVRQPAES
101: APSSGTPSQG ATANDGNNTN GGPSRNGRHV SHSVVLGSFN VGDQTEGIVP DLSRVIGAVL NSFGVSGQLP TNHSTNGTQS SMPSNQSSNA PPGNTSDGEP
201: GIGGQSQATG HSQPRQAFPG VSFQTSMPRV VQIPVTAATT IPIPSFLTPI PDSLDTLMEF INRMEQALSQ NGYQPDTSSA GSGGRPREEL PRNRRGAATP
301: EALSVVLRNA QHLLSGLGVS SLSHIAGRLE QDGSSSDPTL RSQIQTEAVQ VGLAMQHLGA LLLELGRTIL TLRMAPSPEL SYVNAGPAVY ISPSGPNPIM
401: VQPFPHQISP LFTGATVSSN PLTGPVGLGT AQRHINIHIH AGTSGSPMLS SVGNQRSNGE GGQGDRDSNT SSVPAAVPSH STGENVSAGV QPGLGDDVSV
501: AQINARIRDM VNIMQGRDQI PSGIESLERD MSTGHGVATA MPEQPTNIAT TCAPESSSGS LHDLPSERSN SVCQNEKDLG GDLEHPARAK DTSCTTGQSS
601: APSGDATGDA KETNKATPEV ATATPLGLGL GGLDRKKRSK QPKVSGKTED SGTSATLEGV QQSSGTSGQQ LLQSLFSGSS RSDETGLRRG QGSDDRVDVS
701: SAMSQVLESP VLDGLLAGVS RQAGVDSPNM LRNMLQQFTQ NPQIMNTVQQ IAQQVDGQEI ENMMSGGAQG EGGGFDFSRM VQQMMPLVSR AFSQGGPLPH
801: PATIQPDDRQ PSQVNVQSMA QMIEHSDPPE DVFRAMVENA AISQDELVNE LCCDEALSQE YAELLRRDIE GRLKDDQGL
101: APSSGTPSQG ATANDGNNTN GGPSRNGRHV SHSVVLGSFN VGDQTEGIVP DLSRVIGAVL NSFGVSGQLP TNHSTNGTQS SMPSNQSSNA PPGNTSDGEP
201: GIGGQSQATG HSQPRQAFPG VSFQTSMPRV VQIPVTAATT IPIPSFLTPI PDSLDTLMEF INRMEQALSQ NGYQPDTSSA GSGGRPREEL PRNRRGAATP
301: EALSVVLRNA QHLLSGLGVS SLSHIAGRLE QDGSSSDPTL RSQIQTEAVQ VGLAMQHLGA LLLELGRTIL TLRMAPSPEL SYVNAGPAVY ISPSGPNPIM
401: VQPFPHQISP LFTGATVSSN PLTGPVGLGT AQRHINIHIH AGTSGSPMLS SVGNQRSNGE GGQGDRDSNT SSVPAAVPSH STGENVSAGV QPGLGDDVSV
501: AQINARIRDM VNIMQGRDQI PSGIESLERD MSTGHGVATA MPEQPTNIAT TCAPESSSGS LHDLPSERSN SVCQNEKDLG GDLEHPARAK DTSCTTGQSS
601: APSGDATGDA KETNKATPEV ATATPLGLGL GGLDRKKRSK QPKVSGKTED SGTSATLEGV QQSSGTSGQQ LLQSLFSGSS RSDETGLRRG QGSDDRVDVS
701: SAMSQVLESP VLDGLLAGVS RQAGVDSPNM LRNMLQQFTQ NPQIMNTVQQ IAQQVDGQEI ENMMSGGAQG EGGGFDFSRM VQQMMPLVSR AFSQGGPLPH
801: PATIQPDDRQ PSQVNVQSMA QMIEHSDPPE DVFRAMVENA AISQDELVNE LCCDEALSQE YAELLRRDIE GRLKDDQGL
Arabidopsis Description
AT5g42220/K5J14_2 [Source:UniProtKB/TrEMBL;Acc:Q8L745]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.