Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH06004 | Soybean | nucleus | 89.64 | 89.26 |
| CDX95199 | Canola | nucleus | 17.52 | 47.4 |
| Solyc04g082160.2.1 | Tomato | nucleus | 41.88 | 45.74 |
| VIT_09s0054g01880.t01 | Wine grape | nucleus | 45.83 | 45.4 |
| CDY42355 | Canola | nucleus | 39.64 | 45.35 |
| Bra027974.1-P | Field mustard | nucleus | 39.74 | 45.26 |
| AT5G42220.1 | Thale cress | nucleus | 39.21 | 41.75 |
| CDX95198 | Canola | nucleus | 19.98 | 40.39 |
| PGSC0003DMT400025616 | Potato | plastid | 27.78 | 38.46 |
| TraesCS6A01G013800.1 | Wheat | plastid | 5.34 | 32.26 |
| GSMUA_Achr5P18990_001 | Banana | cytosol | 34.19 | 31.13 |
| Os07t0498800-01 | Rice | cytosol | 21.15 | 29.55 |
| KXG25466 | Sorghum | nucleus | 27.99 | 27.67 |
| TraesCS6B01G020900.1 | Wheat | nucleus | 27.99 | 26.9 |
| Zm00001d052721_P001 | Maize | plasma membrane | 25.96 | 26.85 |
| TraesCS6A01G013700.2 | Wheat | nucleus | 27.78 | 26.83 |
| TraesCS6D01G017100.2 | Wheat | nucleus | 27.88 | 26.63 |
| KRH03572 | Soybean | nucleus | 19.23 | 25.17 |
| HORVU6Hr1G002580.6 | Barley | plastid | 27.99 | 24.69 |
Protein Annotations
| EntrezGene:100811870 | Gene3D:3.10.20.90 | MapMan:35.1 | EMBL:ACUP02009097 | ncoils:Coil | EnsemblPlantsGene:GLYMA_14G223100 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | UniProt:I1MBZ3 | InterPro:IPR000626 | EnsemblPlants:KRH17506 |
| ProteinID:KRH17506 | ProteinID:KRH17506.1 | ProteinID:KRH17507.1 | PFAM:PF00240 | PRINTS:PR00348 | PFscan:PS50053 |
| PANTHER:PTHR15204 | PANTHER:PTHR15204:SF5 | SMART:SM00213 | SUPFAM:SSF54236 | UniParc:UPI00023D1A01 | InterPro:Ubiquitin |
| InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr14:-:48828668..48841524
Molecular Weight (calculated)
98442.8 Da
IEP (calculated)
5.226
GRAVY (calculated)
-0.401
Length
936 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGQSSNEGS STGNISAECS DSTVQLNIKT LDSRIYSFQV DKNMPVSLFK EKIANEIGVP VNQQRLIFRG KVLKDEHVLS EYHVENGHTL HLVERQPNQS
101: QASGMSSGES TGTSGNRGNG VGSGAPRNRV GQISHSVVLG TFNVGEQGEG IVHDLTRVIG HVLNSIGNSG QSTISGPNAT QTSSVQPRNE TDGMHAGNQN
201: PAGNQAPSGQ TFHGPTFQSV SHVVQIPVAA GTIPIPSLNA PIPDSLNTLS EFMNRMEQIL TQNGYQSNLS SANPRDQLVE LPSNVQGLPT LEALSTVLHR
301: AEQLLGGQAV AALSHIAGRL EREGTSADLH IRGQIQSESV QIGLAMQHLG ALLLELGRTM LTLRMGQSSA ESVVNAGPAV YISPSGPNPI MVQPFPLQTS
401: SLFGGPVPPS TPATLGTIGI GNAPRNVNIH IHAGTSLAPI VSAIGSRENN GEGTRSEHHN EPGSGDSGST RVLPVRNVIA ATIPSHPPGV GVSSSTQTGF
501: GISTSQPPSD SASLSSVLAE INSRLRNVVG NMQGDNTVPS GQMESNSRDL SSGSESRPPT VNKQQDTVDV NGFGAISASS VGCTSESEVQ KVQTEAVQTS
601: SNVLVDKFVS SSSNQDLQSC SSGETIVKPE IEQDVLAVSE RQNVTEPAKA APLGLGVGGL ERKRRTRLQP PVSKGADDGS SSSSVNQNQQ TRTDGQHILQ
701: TLASHGSGLN SRNANGPSQR PLPSSDRPID VAGLMSQALH SPALNGLLEG VSQQTGVDSP DGLRNMLHQF TQSPQMMNTV NQIVQQVGSQ DVGNMFAGTE
801: RGQGGGIDIS RMFQQMMPIV SRALGGGNPS SLFSAEEAEP HAPYRDGTVD RDEYSDNQSL QLYLQPLAER IEHLGPSTDI FRAVAEIAVQ LSGSGSTSND
901: LLDELCSNES LAREYVDMLR FDVSKLLEGH SETDNV
101: QASGMSSGES TGTSGNRGNG VGSGAPRNRV GQISHSVVLG TFNVGEQGEG IVHDLTRVIG HVLNSIGNSG QSTISGPNAT QTSSVQPRNE TDGMHAGNQN
201: PAGNQAPSGQ TFHGPTFQSV SHVVQIPVAA GTIPIPSLNA PIPDSLNTLS EFMNRMEQIL TQNGYQSNLS SANPRDQLVE LPSNVQGLPT LEALSTVLHR
301: AEQLLGGQAV AALSHIAGRL EREGTSADLH IRGQIQSESV QIGLAMQHLG ALLLELGRTM LTLRMGQSSA ESVVNAGPAV YISPSGPNPI MVQPFPLQTS
401: SLFGGPVPPS TPATLGTIGI GNAPRNVNIH IHAGTSLAPI VSAIGSRENN GEGTRSEHHN EPGSGDSGST RVLPVRNVIA ATIPSHPPGV GVSSSTQTGF
501: GISTSQPPSD SASLSSVLAE INSRLRNVVG NMQGDNTVPS GQMESNSRDL SSGSESRPPT VNKQQDTVDV NGFGAISASS VGCTSESEVQ KVQTEAVQTS
601: SNVLVDKFVS SSSNQDLQSC SSGETIVKPE IEQDVLAVSE RQNVTEPAKA APLGLGVGGL ERKRRTRLQP PVSKGADDGS SSSSVNQNQQ TRTDGQHILQ
701: TLASHGSGLN SRNANGPSQR PLPSSDRPID VAGLMSQALH SPALNGLLEG VSQQTGVDSP DGLRNMLHQF TQSPQMMNTV NQIVQQVGSQ DVGNMFAGTE
801: RGQGGGIDIS RMFQQMMPIV SRALGGGNPS SLFSAEEAEP HAPYRDGTVD RDEYSDNQSL QLYLQPLAER IEHLGPSTDI FRAVAEIAVQ LSGSGSTSND
901: LLDELCSNES LAREYVDMLR FDVSKLLEGH SETDNV
001: MGDNGKDEIM VEASQCAGAM VEIKIKTLDS QTYTLRVDKC VPVPALKEQV ASVTGVVTEQ QRLICRGKVM KDDQLLSAYH VEDGHTLHLV VRQPVSESST
101: SNAAADPALS AGDSQGSQRS RVVVGSFNIA EQADGVYSDL GQIVSAVLGS LGISNPEGGI EGIDDMGPLH ERLSRSSGPG TARDSSGGRS ATPNAVDQTS
201: TPLASSQPAA IPDSLTTLSE YLNHLRQEFA ANGSNANNLQ DSENSVGNVQ DSASTTGESR IPRPSHLAEV LQSTRQLLIG EVADCLSNLS RQLVDHVNVT
301: DPPTRRLCQS NMLQSGSLLE SLGISLLELG RATMMLRLGQ TPDDAVVDAG PAVFISPTGR NPLPSHSSRL GTSIGSLQAG TAHSNPFAGQ SLASAPRNIE
401: IRIRTGSWVP ASGTNQREES TTQQTPGQTI PSTPSSTTDP APSTRGPSEP LRNPVALVIP VVARYQQISL GGRSSTGLDG VHQPVTESSR QPQSVGTPGR
501: EGDSSASPGG RGLSELRNRI HQFLRPLSRR ENQAGSTESQ GAANPSATAS TETNEAVANA QVEPATTTDE GNFISSVLQQ IMPFISQNVA SSSSGEAATG
601: RGSNSRQASS REAEEEEGTE RGNSTRRPEP PSPPESKRQR RE
101: SNAAADPALS AGDSQGSQRS RVVVGSFNIA EQADGVYSDL GQIVSAVLGS LGISNPEGGI EGIDDMGPLH ERLSRSSGPG TARDSSGGRS ATPNAVDQTS
201: TPLASSQPAA IPDSLTTLSE YLNHLRQEFA ANGSNANNLQ DSENSVGNVQ DSASTTGESR IPRPSHLAEV LQSTRQLLIG EVADCLSNLS RQLVDHVNVT
301: DPPTRRLCQS NMLQSGSLLE SLGISLLELG RATMMLRLGQ TPDDAVVDAG PAVFISPTGR NPLPSHSSRL GTSIGSLQAG TAHSNPFAGQ SLASAPRNIE
401: IRIRTGSWVP ASGTNQREES TTQQTPGQTI PSTPSSTTDP APSTRGPSEP LRNPVALVIP VVARYQQISL GGRSSTGLDG VHQPVTESSR QPQSVGTPGR
501: EGDSSASPGG RGLSELRNRI HQFLRPLSRR ENQAGSTESQ GAANPSATAS TETNEAVANA QVEPATTTDE GNFISSVLQQ IMPFISQNVA SSSSGEAATG
601: RGSNSRQASS REAEEEEGTE RGNSTRRPEP PSPPESKRQR RE
Arabidopsis Description
Ubiquitin-like superfamily protein [Source:TAIR;Acc:AT5G25270]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.