Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027974.1-P | Field mustard | nucleus | 97.07 | 96.59 |
| CDX95199 | Canola | nucleus | 37.9 | 89.6 |
| CDX95198 | Canola | nucleus | 49.63 | 87.69 |
| AT5G42220.1 | Thale cress | nucleus | 64.91 | 60.41 |
| KRH17506 | Soybean | nucleus | 45.35 | 39.64 |
| KRH06004 | Soybean | nucleus | 45.11 | 39.26 |
| Solyc04g082160.2.1 | Tomato | nucleus | 40.59 | 38.74 |
| VIT_09s0054g01880.t01 | Wine grape | nucleus | 42.3 | 36.61 |
| PGSC0003DMT400025616 | Potato | plastid | 27.63 | 33.43 |
| Os07t0498800-01 | Rice | cytosol | 23.35 | 28.51 |
| TraesCS6A01G013800.1 | Wheat | plastid | 5.38 | 28.39 |
| GSMUA_Achr5P18990_001 | Banana | cytosol | 34.84 | 27.72 |
| TraesCS6B01G020900.1 | Wheat | nucleus | 32.15 | 27.0 |
| TraesCS6D01G017100.2 | Wheat | nucleus | 32.15 | 26.84 |
| TraesCS6A01G013700.2 | Wheat | nucleus | 31.78 | 26.83 |
| KXG25466 | Sorghum | nucleus | 30.68 | 26.5 |
| Zm00001d052721_P001 | Maize | plasma membrane | 27.75 | 25.08 |
| CDX80493 | Canola | cytosol | 18.7 | 24.44 |
| CDX88166 | Canola | cytosol | 18.95 | 24.14 |
| HORVU6Hr1G002580.6 | Barley | plastid | 31.17 | 24.03 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078HV16 | UniProt:A0A078HV16 | EnsemblPlants:CDY42355 | ProteinID:CDY42355 |
| ProteinID:CDY42355.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00074624001 | InterPro:IPR000626 |
| PFAM:PF00240 | PRINTS:PR00348 | ScanProsite:PS00299 | PFscan:PS50053 | PANTHER:PTHR15204 | PANTHER:PTHR15204:SF5 |
| SMART:SM00213 | SUPFAM:SSF54236 | UniParc:UPI0004EE92D3 | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS |
| InterPro:Ubiquitin_dom | SEG:seg | : | : | : | : |
Description
BnaA09g15900DBnaA09g15900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HV16]
Coordinates
chrLK032522:+:101737..106495
Molecular Weight (calculated)
86186.3 Da
IEP (calculated)
5.013
GRAVY (calculated)
-0.512
Length
818 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDQAANQCS SSNNASVEST LELNIKTLDS QTYTFKADKN EMVSVFKEKI ASETGVPVAQ QRLIFRGRVL KDDHPLSEYH LENGHTLHLI VRQQPAESMP
101: SSDTPSEGAA ANDGNGSNGG QSRGRGHISH SVVLGSFNSP DQTEGFGPDI SRVIGAVLNS FGVGGQNLPN SNINVTQPSM PSNLSGHPPP GNASGGTPAT
201: GGQSQAPGQS QPRPAFTSAA FRASMPHVVQ IPITAATTIP IPSFQTPIPD SLDTLMEFIN RMEQALSRNG YQPDTSSATS EGRPREELPR HRQGPSTPEA
301: LAIVLRNSQR LLSGLAVSSL SHIAGRLEQD GSSSDPAHRA QIQSEAVQVG LAMQHLGALL LELGRTLLTL RMGQSQEFSY VNSGPAVYIS PSGPNPIMVQ
401: PFPHQTSPLF TGAAGSSNPV TGQGGLGTPS RQINIHIHAG SSASPTMSSV GNHQSSGEQG EHNSNTSSVR VLPTRNFTAA PAPAPSHITG ENVSAEIQSG
501: ASSAMTEQAT NTVATSTPEE SSPLRDLPSE RSDSIGQRGK DHCEDSGHPE VDTTSDAKLT KKATPEVVTP LGLGLGGLDR KKRSKQLKTL GKNEDGGTSA
601: SVEGVQQGSG TSSQQQLLQS LFSGSSRGRG SDDGVDVSSA MSQVLESPVL DGLLGGVSRQ AGVDSPNMLR NMLQQFTQNP QIMNTVQQIA QQVDGQEIEN
701: MMSGGANSEG GGGFDLSRMV QQMMPLVSRA FSQGGPSFEP ALQQADVHQP LQANVQPMMQ MIEHSDPPED VFRAMVENAA MSQEDLADVL CSDEALANEY
801: AELLRRDLEG RLQDNQGP
101: SSDTPSEGAA ANDGNGSNGG QSRGRGHISH SVVLGSFNSP DQTEGFGPDI SRVIGAVLNS FGVGGQNLPN SNINVTQPSM PSNLSGHPPP GNASGGTPAT
201: GGQSQAPGQS QPRPAFTSAA FRASMPHVVQ IPITAATTIP IPSFQTPIPD SLDTLMEFIN RMEQALSRNG YQPDTSSATS EGRPREELPR HRQGPSTPEA
301: LAIVLRNSQR LLSGLAVSSL SHIAGRLEQD GSSSDPAHRA QIQSEAVQVG LAMQHLGALL LELGRTLLTL RMGQSQEFSY VNSGPAVYIS PSGPNPIMVQ
401: PFPHQTSPLF TGAAGSSNPV TGQGGLGTPS RQINIHIHAG SSASPTMSSV GNHQSSGEQG EHNSNTSSVR VLPTRNFTAA PAPAPSHITG ENVSAEIQSG
501: ASSAMTEQAT NTVATSTPEE SSPLRDLPSE RSDSIGQRGK DHCEDSGHPE VDTTSDAKLT KKATPEVVTP LGLGLGGLDR KKRSKQLKTL GKNEDGGTSA
601: SVEGVQQGSG TSSQQQLLQS LFSGSSRGRG SDDGVDVSSA MSQVLESPVL DGLLGGVSRQ AGVDSPNMLR NMLQQFTQNP QIMNTVQQIA QQVDGQEIEN
701: MMSGGANSEG GGGFDLSRMV QQMMPLVSRA FSQGGPSFEP ALQQADVHQP LQANVQPMMQ MIEHSDPPED VFRAMVENAA MSQEDLADVL CSDEALANEY
801: AELLRRDLEG RLQDNQGP
001: MEDQPINQCS SSTNASEKTP ESTLELNIKT LDSRTYTFQV NKNETVLLFK EKIASETGVP VGQQRLIFRG RVLKDDHPLS EYHLENGHTL HLIVRQPAES
101: APSSGTPSQG ATANDGNNTN GGPSRNGRHV SHSVVLGSFN VGDQTEGIVP DLSRVIGAVL NSFGVSGQLP TNHSTNGTQS SMPSNQSSNA PPGNTSDGEP
201: GIGGQSQATG HSQPRQAFPG VSFQTSMPRV VQIPVTAATT IPIPSFLTPI PDSLDTLMEF INRMEQALSQ NGYQPDTSSA GSGGRPREEL PRNRRGAATP
301: EALSVVLRNA QHLLSGLGVS SLSHIAGRLE QDGSSSDPTL RSQIQTEAVQ VGLAMQHLGA LLLELGRTIL TLRMAPSPEL SYVNAGPAVY ISPSGPNPIM
401: VQPFPHQISP LFTGATVSSN PLTGPVGLGT AQRHINIHIH AGTSGSPMLS SVGNQRSNGE GGQGDRDSNT SSVPAAVPSH STGENVSAGV QPGLGDDVSV
501: AQINARIRDM VNIMQGRDQI PSGIESLERD MSTGHGVATA MPEQPTNIAT TCAPESSSGS LHDLPSERSN SVCQNEKDLG GDLEHPARAK DTSCTTGQSS
601: APSGDATGDA KETNKATPEV ATATPLGLGL GGLDRKKRSK QPKVSGKTED SGTSATLEGV QQSSGTSGQQ LLQSLFSGSS RSDETGLRRG QGSDDRVDVS
701: SAMSQVLESP VLDGLLAGVS RQAGVDSPNM LRNMLQQFTQ NPQIMNTVQQ IAQQVDGQEI ENMMSGGAQG EGGGFDFSRM VQQMMPLVSR AFSQGGPLPH
801: PATIQPDDRQ PSQVNVQSMA QMIEHSDPPE DVFRAMVENA AISQDELVNE LCCDEALSQE YAELLRRDIE GRLKDDQGL
101: APSSGTPSQG ATANDGNNTN GGPSRNGRHV SHSVVLGSFN VGDQTEGIVP DLSRVIGAVL NSFGVSGQLP TNHSTNGTQS SMPSNQSSNA PPGNTSDGEP
201: GIGGQSQATG HSQPRQAFPG VSFQTSMPRV VQIPVTAATT IPIPSFLTPI PDSLDTLMEF INRMEQALSQ NGYQPDTSSA GSGGRPREEL PRNRRGAATP
301: EALSVVLRNA QHLLSGLGVS SLSHIAGRLE QDGSSSDPTL RSQIQTEAVQ VGLAMQHLGA LLLELGRTIL TLRMAPSPEL SYVNAGPAVY ISPSGPNPIM
401: VQPFPHQISP LFTGATVSSN PLTGPVGLGT AQRHINIHIH AGTSGSPMLS SVGNQRSNGE GGQGDRDSNT SSVPAAVPSH STGENVSAGV QPGLGDDVSV
501: AQINARIRDM VNIMQGRDQI PSGIESLERD MSTGHGVATA MPEQPTNIAT TCAPESSSGS LHDLPSERSN SVCQNEKDLG GDLEHPARAK DTSCTTGQSS
601: APSGDATGDA KETNKATPEV ATATPLGLGL GGLDRKKRSK QPKVSGKTED SGTSATLEGV QQSSGTSGQQ LLQSLFSGSS RSDETGLRRG QGSDDRVDVS
701: SAMSQVLESP VLDGLLAGVS RQAGVDSPNM LRNMLQQFTQ NPQIMNTVQQ IAQQVDGQEI ENMMSGGAQG EGGGFDFSRM VQQMMPLVSR AFSQGGPLPH
801: PATIQPDDRQ PSQVNVQSMA QMIEHSDPPE DVFRAMVENA AISQDELVNE LCCDEALSQE YAELLRRDIE GRLKDDQGL
Arabidopsis Description
AT5g42220/K5J14_2 [Source:UniProtKB/TrEMBL;Acc:Q8L745]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.