Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95199 | Canola | nucleus | 18.31 | 50.0 |
| KRH06004 | Soybean | nucleus | 45.71 | 45.96 |
| KRH17506 | Soybean | nucleus | 45.4 | 45.83 |
| CDY42355 | Canola | nucleus | 36.61 | 42.3 |
| Bra027974.1-P | Field mustard | nucleus | 36.3 | 41.73 |
| AT5G42220.1 | Thale cress | nucleus | 38.31 | 41.18 |
| Solyc04g082160.2.1 | Tomato | nucleus | 37.04 | 40.84 |
| PGSC0003DMT400025616 | Potato | plastid | 25.61 | 35.8 |
| CDX95198 | Canola | nucleus | 16.19 | 33.05 |
| TraesCS6A01G013800.1 | Wheat | plastid | 5.4 | 32.9 |
| GSMUA_Achr5P18990_001 | Banana | cytosol | 33.33 | 30.64 |
| KXG25466 | Sorghum | nucleus | 28.25 | 28.19 |
| Os07t0498800-01 | Rice | cytosol | 18.84 | 26.57 |
| Zm00001d052721_P001 | Maize | plasma membrane | 25.08 | 26.19 |
| TraesCS6B01G020900.1 | Wheat | nucleus | 26.56 | 25.77 |
| TraesCS6A01G013700.2 | Wheat | nucleus | 26.35 | 25.7 |
| TraesCS6D01G017100.2 | Wheat | nucleus | 26.45 | 25.51 |
| VIT_04s0008g06230.t01 | Wine grape | cytosol | 19.15 | 24.73 |
| HORVU6Hr1G002580.6 | Barley | plastid | 26.35 | 23.47 |
| VIT_11s0118g00660.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 16.83 | 22.65 |
Protein Annotations
| EntrezGene:100263131 | Gene3D:3.10.20.90 | MapMan:35.1 | ProteinID:CBI18348 | ProteinID:CBI18348.3 | UniProt:D7SRR6 |
| EMBL:FN594972 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR000626 | PFAM:PF00240 |
| PRINTS:PR00348 | PFscan:PS50053 | PANTHER:PTHR15204 | PANTHER:PTHR15204:SF5 | SMART:SM00213 | SUPFAM:SSF54236 |
| TIGR:TC56279 | TIGR:TC58920 | TIGR:TC60190 | TIGR:TC60560 | UniParc:UPI0001BE1748 | InterPro:Ubiquitin |
| InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | ArrayExpress:VIT_09s0054g01880 | EnsemblPlantsGene:VIT_09s0054g01880 | EnsemblPlants:VIT_09s0054g01880.t01 | unigene:Vvi.18636 |
| RefSeq:XP_010655200.1 | RefSeq:XP_010655201.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr9:-:22970715..22998385
Molecular Weight (calculated)
99083.3 Da
IEP (calculated)
5.667
GRAVY (calculated)
-0.543
Length
945 amino acids
Sequence
(BLAST)
(BLAST)
001: MADQYSCEGS SLSPVSGDCS ESTVELNVKT LDSRIHSFHV DKNLPVSLFK EKIANEIGVP VEQQRLIFRG KVLKDDQLLA EYHVENGHTL HLVARDPTQS
101: QPSSGQSSGE TNGNNGSRGN DANAGGPRAR VGQISHSVVL GTFNVGEQAE GIVPDLTRVI GAVLNSFGIG SQTTNTATGG AQPNTQSNAP GQASQGIEVD
201: GTHGNANGQR QEGNQAQPSQ PFQSLPQVMQ FPVPGGAGPA PQIQVPIPDS LHTLSEFMNR MGLSLSHNVY QPNSSPTNAD IPRVELPSNS RGLPTPEALS
301: IVMRQAERLL SGNAVAALSH IAGRVEQEGA STDPTIRGEI QTEAMQVGLA MQHLGVLLLE LGRTILTLRM GQSPDESSVN AGPAVYISPS GPNPIMVQPF
401: PLQTSSFFGG STVPQSNPPA GPGNAPRHIN IHIHAGTSLP PIVSAAGTRA GNGDGMQGER ANGNVSAQSD ASISQAPSDS GALSSVIAEV NSRIRNLVDN
501: MRGGNQVPSG QAGSSTVQNM STGSGPGNDV GSDQLKNMAV AGARETSLPS DTCIPGTDGH TSQPEHHQMN NNQDKRGVSQ SKDVPSTCAV EGSFSCSSGS
601: DEATSGPADA SDDAPRSSQR QDIPEEAKAV PLGLGMGGLQ LKKRSKQPKS QGKNNDCGTS SVPSVNQNQR TMTSAQQVLQ SLASRGSTAN RTDANCPPSQ
701: FLSSRSFTAN RMDVNRPPSH FLASRSFTAN RMDASGPPSG QPLHVLGQVR EGMSSGGQGL AEQSGAGSPD VLSNMLQQLS QNPLMMNTVN QIAQQVDGQE
801: LESMFSGLGR GQGGGIDLSR MVQQMMPIVS RALSSGPNRG ELFHGVGSEP QPQHSERRPS RGDKPDVQNS QTDLREVAES IERQIPPQDI FRSVAENAVQ
901: LYANGTGPEG LLDVLCSDEH LATEFMEVLQ RDVCNRLHGK SGAKD
101: QPSSGQSSGE TNGNNGSRGN DANAGGPRAR VGQISHSVVL GTFNVGEQAE GIVPDLTRVI GAVLNSFGIG SQTTNTATGG AQPNTQSNAP GQASQGIEVD
201: GTHGNANGQR QEGNQAQPSQ PFQSLPQVMQ FPVPGGAGPA PQIQVPIPDS LHTLSEFMNR MGLSLSHNVY QPNSSPTNAD IPRVELPSNS RGLPTPEALS
301: IVMRQAERLL SGNAVAALSH IAGRVEQEGA STDPTIRGEI QTEAMQVGLA MQHLGVLLLE LGRTILTLRM GQSPDESSVN AGPAVYISPS GPNPIMVQPF
401: PLQTSSFFGG STVPQSNPPA GPGNAPRHIN IHIHAGTSLP PIVSAAGTRA GNGDGMQGER ANGNVSAQSD ASISQAPSDS GALSSVIAEV NSRIRNLVDN
501: MRGGNQVPSG QAGSSTVQNM STGSGPGNDV GSDQLKNMAV AGARETSLPS DTCIPGTDGH TSQPEHHQMN NNQDKRGVSQ SKDVPSTCAV EGSFSCSSGS
601: DEATSGPADA SDDAPRSSQR QDIPEEAKAV PLGLGMGGLQ LKKRSKQPKS QGKNNDCGTS SVPSVNQNQR TMTSAQQVLQ SLASRGSTAN RTDANCPPSQ
701: FLSSRSFTAN RMDVNRPPSH FLASRSFTAN RMDASGPPSG QPLHVLGQVR EGMSSGGQGL AEQSGAGSPD VLSNMLQQLS QNPLMMNTVN QIAQQVDGQE
801: LESMFSGLGR GQGGGIDLSR MVQQMMPIVS RALSSGPNRG ELFHGVGSEP QPQHSERRPS RGDKPDVQNS QTDLREVAES IERQIPPQDI FRSVAENAVQ
901: LYANGTGPEG LLDVLCSDEH LATEFMEVLQ RDVCNRLHGK SGAKD
001: MEDQPINQCS SSTNASEKTP ESTLELNIKT LDSRTYTFQV NKNETVLLFK EKIASETGVP VGQQRLIFRG RVLKDDHPLS EYHLENGHTL HLIVRQPAES
101: APSSGTPSQG ATANDGNNTN GGPSRNGRHV SHSVVLGSFN VGDQTEGIVP DLSRVIGAVL NSFGVSGQLP TNHSTNGTQS SMPSNQSSNA PPGNTSDGEP
201: GIGGQSQATG HSQPRQAFPG VSFQTSMPRV VQIPVTAATT IPIPSFLTPI PDSLDTLMEF INRMEQALSQ NGYQPDTSSA GSGGRPREEL PRNRRGAATP
301: EALSVVLRNA QHLLSGLGVS SLSHIAGRLE QDGSSSDPTL RSQIQTEAVQ VGLAMQHLGA LLLELGRTIL TLRMAPSPEL SYVNAGPAVY ISPSGPNPIM
401: VQPFPHQISP LFTGATVSSN PLTGPVGLGT AQRHINIHIH AGTSGSPMLS SVGNQRSNGE GGQGDRDSNT SSVPAAVPSH STGENVSAGV QPGLGDDVSV
501: AQINARIRDM VNIMQGRDQI PSGIESLERD MSTGHGVATA MPEQPTNIAT TCAPESSSGS LHDLPSERSN SVCQNEKDLG GDLEHPARAK DTSCTTGQSS
601: APSGDATGDA KETNKATPEV ATATPLGLGL GGLDRKKRSK QPKVSGKTED SGTSATLEGV QQSSGTSGQQ LLQSLFSGSS RSDETGLRRG QGSDDRVDVS
701: SAMSQVLESP VLDGLLAGVS RQAGVDSPNM LRNMLQQFTQ NPQIMNTVQQ IAQQVDGQEI ENMMSGGAQG EGGGFDFSRM VQQMMPLVSR AFSQGGPLPH
801: PATIQPDDRQ PSQVNVQSMA QMIEHSDPPE DVFRAMVENA AISQDELVNE LCCDEALSQE YAELLRRDIE GRLKDDQGL
101: APSSGTPSQG ATANDGNNTN GGPSRNGRHV SHSVVLGSFN VGDQTEGIVP DLSRVIGAVL NSFGVSGQLP TNHSTNGTQS SMPSNQSSNA PPGNTSDGEP
201: GIGGQSQATG HSQPRQAFPG VSFQTSMPRV VQIPVTAATT IPIPSFLTPI PDSLDTLMEF INRMEQALSQ NGYQPDTSSA GSGGRPREEL PRNRRGAATP
301: EALSVVLRNA QHLLSGLGVS SLSHIAGRLE QDGSSSDPTL RSQIQTEAVQ VGLAMQHLGA LLLELGRTIL TLRMAPSPEL SYVNAGPAVY ISPSGPNPIM
401: VQPFPHQISP LFTGATVSSN PLTGPVGLGT AQRHINIHIH AGTSGSPMLS SVGNQRSNGE GGQGDRDSNT SSVPAAVPSH STGENVSAGV QPGLGDDVSV
501: AQINARIRDM VNIMQGRDQI PSGIESLERD MSTGHGVATA MPEQPTNIAT TCAPESSSGS LHDLPSERSN SVCQNEKDLG GDLEHPARAK DTSCTTGQSS
601: APSGDATGDA KETNKATPEV ATATPLGLGL GGLDRKKRSK QPKVSGKTED SGTSATLEGV QQSSGTSGQQ LLQSLFSGSS RSDETGLRRG QGSDDRVDVS
701: SAMSQVLESP VLDGLLAGVS RQAGVDSPNM LRNMLQQFTQ NPQIMNTVQQ IAQQVDGQEI ENMMSGGAQG EGGGFDFSRM VQQMMPLVSR AFSQGGPLPH
801: PATIQPDDRQ PSQVNVQSMA QMIEHSDPPE DVFRAMVENA AISQDELVNE LCCDEALSQE YAELLRRDIE GRLKDDQGL
Arabidopsis Description
AT5g42220/K5J14_2 [Source:UniProtKB/TrEMBL;Acc:Q8L745]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.