Factsheet for VIT_11s0103g00300.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 2
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0097g00590.t01
VIT_12s0035g01840.t01
VIT_17s0000g06000.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19080.1	VIT_12s0035g01840.t01	AT2G02560.1	21798944
AT2G19080.1	VIT_03s0097g00590.t01	AT3G20000.1	17981999
AT2G19080.1	VIT_17s0000g06000.t01	AT3G47640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g009320.2.1	Tomato	cytosol, nucleus, plastid	69.94	69.94
PGSC0003DMT400021961	Potato	cytosol	69.94	69.94
AT2G19080.1	Thale cress	cytosol, peroxisome, plasma membrane	57.67	59.68
KRH19062	Soybean	cytosol, nucleus, plasma membrane	57.98	59.06
CDX82614	Canola	cytosol	56.44	58.6
Bra038562.1-P	Field mustard	cytosol	56.13	58.28
CDY03366	Canola	cytosol, golgi, peroxisome	56.13	58.28
CDY66507	Canola	cytosol	56.13	58.28
CDY39135	Canola	cytosol	56.13	58.1
Bra038838.1-P	Field mustard	cytosol	40.8	57.58
KRH02821	Soybean	mitochondrion	56.44	57.32
KRH12285	Soybean	cytosol	56.13	55.79
KRH37302	Soybean	cytosol	56.13	55.62
OQU75905	Sorghum	cytosol, plastid	56.13	54.3
GSMUA_Achr1P15670_001	Banana	cytosol	48.47	52.49
Os06t0168000-01	Rice	cytosol, peroxisome	55.21	52.02
TraesCS7B01G030900.1	Wheat	plastid	53.37	51.63
TraesCS7A01G130600.1	Wheat	plastid	53.07	51.34
Zm00001d045193_P002	Maize	mitochondrion	56.44	49.86
TraesCS7D01G130000.1	Wheat	plastid	52.76	49.57
HORVU7Hr1G027350.3	Barley	endoplasmic reticulum, plasma membrane	46.63	47.95

Protein Annotations

EntrezGene:100267718	wikigene:100267718	MapMan:23.2.2.2	EMBL:AM448134	ProteinID:CAN72044	ProteinID:CAN72044.1
ProteinID:CBI40120	ProteinID:CBI40120.3	UniProt:D7UBK5	EMBL:FN596751	GO:GO:0001401	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0005743
GO:GO:0006626	GO:GO:0006810	GO:GO:0008150	GO:GO:0009536	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	EntrezGene:LOC100267718	wikigene:LOC100267718	InterPro:Metaxin	InterPro:Metaxin_GST
PFAM:PF17171	PFAM:PF17172	PIRSF:PIRSF038150	PANTHER:PTHR12289	PANTHER:PTHR12289:SF41	TMHMM:TMhelix
InterPro:Thioredoxin-like_fold	UniParc:UPI00015CD58E	ArrayExpress:VIT_11s0103g00300	EnsemblPlantsGene:VIT_11s0103g00300	EnsemblPlants:VIT_11s0103g00300.t01	unigene:Vvi.26396
RefSeq:XP_002266817	RefSeq:XP_002266817.1	RefSeq:XP_010656785.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr11:+:15960314..15968095

Molecular Weight (calculated)

36887.8 Da

IEP (calculated)

5.145

GRAVY (calculated)

-0.316

Length

326 amino acids

Sequence
(BLAST)

001: MDELDNQKLT LVARKPCFGL PTACPSCLPV YIYLRFAQVP FDLSFNLIHP DSDQIPYIES GAYVAYNNEK GGVLESLKED GIIDLDSQLH AIPEWLSMKV
101: MISTWLEEAI MYELWVCSDG SSAKKIYYSD LPWPIGKILY FKQIHAVKQL LGITKDNAER REEEIHRRAT IAYGALSTRL GEQTFFFENR PSGVDALFLG
201: HALFTLQALP DTSVLRSKLL EHSNLVQYAE KLKTEFMEAG SSSSSVPRFP AEPSSSTSRR GPSNWSSKAK SKPKREKTEE EKTFRRRAKY FLVTQLVAVL
301: VFLSLLGVSG GDNEVDLDDE DDDYNY

Best Arabidopsis Sequence Match ( AT2G19080.1 )
(BLAST)

001: MEGDQETNVY TLVARKPSFD LPTACPNCLP AYIYLKLAQL PFELAFNSTF PDSDELPYFE SDTYVAYNNE DGGVIEKLKK DGIVNLDSQL QSLSDYLSLK
101: ALIVSWLEEA LTYEIWVGTE GISTSKIYYS DLPWVISKVL FYKQTYLAKN RLGITKENAE QREKQIYKRA SEAYEALSTR LGEQKFLFED RPSSLDAFLL
201: SHILFIIQAL PVTSVLRCKL LEHSNLVRYA EKLKSEFLEA SSSSPSPPLH SFPSSFPRKS SKPKSKPKVE KTEEEKKFKK RARFFLAAQF LAVVIYVSVM
301: GGGSSDELEY EDEDD

Arabidopsis Description

MTX1Mitochondrial outer membrane import complex protein METAXIN [Source:UniProtKB/Swiss-Prot;Acc:O64471]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.