Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42355 | Canola | nucleus | 96.59 | 97.07 |
| AT5G42220.1 | Thale cress | nucleus | 64.48 | 60.3 |
| KRH17506 | Soybean | nucleus | 45.26 | 39.74 |
| KRH06004 | Soybean | nucleus | 45.01 | 39.36 |
| Solyc04g082160.2.1 | Tomato | nucleus | 40.02 | 38.39 |
| VIT_09s0054g01880.t01 | Wine grape | nucleus | 41.73 | 36.3 |
| PGSC0003DMT400025616 | Potato | plastid | 27.37 | 33.28 |
| Os07t0498800-01 | Rice | cytosol | 23.24 | 28.51 |
| TraesCS6A01G013800.1 | Wheat | plastid | 5.35 | 28.39 |
| GSMUA_Achr5P18990_001 | Banana | cytosol | 34.67 | 27.72 |
| TraesCS6B01G020900.1 | Wheat | nucleus | 31.75 | 26.8 |
| KXG25466 | Sorghum | nucleus | 30.78 | 26.72 |
| TraesCS6D01G017100.2 | Wheat | nucleus | 31.75 | 26.63 |
| TraesCS6A01G013700.2 | Wheat | nucleus | 31.39 | 26.63 |
| Zm00001d052721_P001 | Maize | plasma membrane | 27.86 | 25.3 |
| Bra009827.1-P | Field mustard | cytosol | 18.86 | 24.14 |
| HORVU6Hr1G002580.6 | Barley | plastid | 30.78 | 23.85 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | EnsemblPlantsGene:Bra027974 | EnsemblPlants:Bra027974.1 | EnsemblPlants:Bra027974.1-P | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | InterPro:IPR000626 | UniProt:M4EGR0 | PFAM:PF00240 | PRINTS:PR00348 | ScanProsite:PS00299 |
| PFscan:PS50053 | PANTHER:PTHR15204 | PANTHER:PTHR15204:SF5 | SMART:SM00213 | SUPFAM:SSF54236 | UniParc:UPI0002542298 |
| InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS | InterPro:Ubiquitin_dom | SEG:seg | : |
Description
AT5G42220 (E=4e-165) | ubiquitin family protein
Coordinates
chrA09:+:10249858..10254113
Molecular Weight (calculated)
86541.9 Da
IEP (calculated)
5.071
GRAVY (calculated)
-0.496
Length
822 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDQATNQCS SSNNASVEST LELNIKTLDS QTYTFKADKN EMVSVFKEKI ASETGVPVAQ QRLIFRGRVL KDDHPLSEYH LENGHTLHLI VRQQPAESMP
101: SSGMPSEGAA ANDGNGTNGG QPRGRGHISH SVVLGSFNSP DQTEGFGPDI SRVIGAVLNS FGVGGQNLPN NSVNVTQPSM PSNLSGHPPP GNASGGTPAT
201: GGQSQAAGQS QPRPAFTSAA FRASMPHVVQ IPITAATTIP IPSFQTPIPD SLDTLMEFIN RMEQALSRNG YQPDTSSATS EGRPREELPR NRQGPSTPEA
301: LAIVLRNSQR LLSGLAVSSL SHIAGRLEQD GSSSDPALRA QIQSEAVQVG LAMQHLGALL LELGRTLLTL RMGQSQEFSY VNSGPAVYIS PSGPNPIMVQ
401: PFPHQTSPLF TGAAGSSNPV TGQGGLGTPS RQINIHIHAG SSASPTMSSV GNHQSSGEQG EHNSNTSSVR VLPTRNFTAA PAPAPAPAPS HFTGENVSAE
501: IQSGASSAMT EQATNTVATS TPEESSPLRD LPSERSDSIG QRGKEHCEDS GHPEVDTTSD AKLTKKATPE VVTPLGLGLG GLDRKKRSKQ LKTLGKNEDG
601: GTSASVEGVQ QGSGTSSQQQ LLQSLFSGSS RGRGSDDGVD VSSAMSQVLE SPVLDGLLGG VSRQAGVDSP NMLRNMLQQF TQNPQIMNTV QQIAQQVDGQ
701: EIENMMSGGA NSEGGGGFDL SRMVQQMMPL VSRAFSQGGP SFEPALQQAD VHQPLQANVQ PMMQMIEHSD PPEDVFRAMV ENAAMSQEDL ADVLCSDEAL
801: AHEYAELLRR DLEGRLQDNH GP
101: SSGMPSEGAA ANDGNGTNGG QPRGRGHISH SVVLGSFNSP DQTEGFGPDI SRVIGAVLNS FGVGGQNLPN NSVNVTQPSM PSNLSGHPPP GNASGGTPAT
201: GGQSQAAGQS QPRPAFTSAA FRASMPHVVQ IPITAATTIP IPSFQTPIPD SLDTLMEFIN RMEQALSRNG YQPDTSSATS EGRPREELPR NRQGPSTPEA
301: LAIVLRNSQR LLSGLAVSSL SHIAGRLEQD GSSSDPALRA QIQSEAVQVG LAMQHLGALL LELGRTLLTL RMGQSQEFSY VNSGPAVYIS PSGPNPIMVQ
401: PFPHQTSPLF TGAAGSSNPV TGQGGLGTPS RQINIHIHAG SSASPTMSSV GNHQSSGEQG EHNSNTSSVR VLPTRNFTAA PAPAPAPAPS HFTGENVSAE
501: IQSGASSAMT EQATNTVATS TPEESSPLRD LPSERSDSIG QRGKEHCEDS GHPEVDTTSD AKLTKKATPE VVTPLGLGLG GLDRKKRSKQ LKTLGKNEDG
601: GTSASVEGVQ QGSGTSSQQQ LLQSLFSGSS RGRGSDDGVD VSSAMSQVLE SPVLDGLLGG VSRQAGVDSP NMLRNMLQQF TQNPQIMNTV QQIAQQVDGQ
701: EIENMMSGGA NSEGGGGFDL SRMVQQMMPL VSRAFSQGGP SFEPALQQAD VHQPLQANVQ PMMQMIEHSD PPEDVFRAMV ENAAMSQEDL ADVLCSDEAL
801: AHEYAELLRR DLEGRLQDNH GP
001: MEDQPINQCS SSTNASEKTP ESTLELNIKT LDSRTYTFQV NKNETVLLFK EKIASETGVP VGQQRLIFRG RVLKDDHPLS EYHLENGHTL HLIVRQPAES
101: APSSGTPSQG ATANDGNNTN GGPSRNGRHV SHSVVLGSFN VGDQTEGIVP DLSRVIGAVL NSFGVSGQLP TNHSTNGTQS SMPSNQSSNA PPGNTSDGEP
201: GIGGQSQATG HSQPRQAFPG VSFQTSMPRV VQIPVTAATT IPIPSFLTPI PDSLDTLMEF INRMEQALSQ NGYQPDTSSA GSGGRPREEL PRNRRGAATP
301: EALSVVLRNA QHLLSGLGVS SLSHIAGRLE QDGSSSDPTL RSQIQTEAVQ VGLAMQHLGA LLLELGRTIL TLRMAPSPEL SYVNAGPAVY ISPSGPNPIM
401: VQPFPHQISP LFTGATVSSN PLTGPVGLGT AQRHINIHIH AGTSGSPMLS SVGNQRSNGE GGQGDRDSNT SSVPAAVPSH STGENVSAGV QPGLGDDVSV
501: AQINARIRDM VNIMQGRDQI PSGIESLERD MSTGHGVATA MPEQPTNIAT TCAPESSSGS LHDLPSERSN SVCQNEKDLG GDLEHPARAK DTSCTTGQSS
601: APSGDATGDA KETNKATPEV ATATPLGLGL GGLDRKKRSK QPKVSGKTED SGTSATLEGV QQSSGTSGQQ LLQSLFSGSS RSDETGLRRG QGSDDRVDVS
701: SAMSQVLESP VLDGLLAGVS RQAGVDSPNM LRNMLQQFTQ NPQIMNTVQQ IAQQVDGQEI ENMMSGGAQG EGGGFDFSRM VQQMMPLVSR AFSQGGPLPH
801: PATIQPDDRQ PSQVNVQSMA QMIEHSDPPE DVFRAMVENA AISQDELVNE LCCDEALSQE YAELLRRDIE GRLKDDQGL
101: APSSGTPSQG ATANDGNNTN GGPSRNGRHV SHSVVLGSFN VGDQTEGIVP DLSRVIGAVL NSFGVSGQLP TNHSTNGTQS SMPSNQSSNA PPGNTSDGEP
201: GIGGQSQATG HSQPRQAFPG VSFQTSMPRV VQIPVTAATT IPIPSFLTPI PDSLDTLMEF INRMEQALSQ NGYQPDTSSA GSGGRPREEL PRNRRGAATP
301: EALSVVLRNA QHLLSGLGVS SLSHIAGRLE QDGSSSDPTL RSQIQTEAVQ VGLAMQHLGA LLLELGRTIL TLRMAPSPEL SYVNAGPAVY ISPSGPNPIM
401: VQPFPHQISP LFTGATVSSN PLTGPVGLGT AQRHINIHIH AGTSGSPMLS SVGNQRSNGE GGQGDRDSNT SSVPAAVPSH STGENVSAGV QPGLGDDVSV
501: AQINARIRDM VNIMQGRDQI PSGIESLERD MSTGHGVATA MPEQPTNIAT TCAPESSSGS LHDLPSERSN SVCQNEKDLG GDLEHPARAK DTSCTTGQSS
601: APSGDATGDA KETNKATPEV ATATPLGLGL GGLDRKKRSK QPKVSGKTED SGTSATLEGV QQSSGTSGQQ LLQSLFSGSS RSDETGLRRG QGSDDRVDVS
701: SAMSQVLESP VLDGLLAGVS RQAGVDSPNM LRNMLQQFTQ NPQIMNTVQQ IAQQVDGQEI ENMMSGGAQG EGGGFDFSRM VQQMMPLVSR AFSQGGPLPH
801: PATIQPDDRQ PSQVNVQSMA QMIEHSDPPE DVFRAMVENA AISQDELVNE LCCDEALSQE YAELLRRDIE GRLKDDQGL
Arabidopsis Description
AT5g42220/K5J14_2 [Source:UniProtKB/TrEMBL;Acc:Q8L745]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.