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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:
  • extracellular 5
  • golgi 5
  • plasma membrane 5
  • endoplasmic reticulum 6
  • vacuole 6
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, vacuole
Any Predictor:plastid, secretory
BaCelLo:secretory
ChloroP:plastid
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:vacuole
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra038390.1-P Field mustard extracellular 51.59 80.25
AT1G35230.1 Thale cress extracellular 56.35 53.38
Protein Annotations
EnsemblPlants:Bra000670.1EnsemblPlants:Bra000670.1-PEnsemblPlantsGene:Bra000670GO:GO:0005575GO:GO:0016020GO:GO:0016021
PANTHER:PTHR36321SEG:segSignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI0002540282UniProt:M4C8Z2
MapMan:21.4.1.1.1:::::
Description
arabinogalactan protein 10 [Source:TAIR;Acc:AT4G09030](projected from arabidopsis_thaliana,AT4G09030)
Coordinates
chrA03:+:12380143..12380523
Molecular Weight (calculated)
11957.2 Da
IEP (calculated)
6.522
GRAVY (calculated)
0.360
Length
126 amino acids
Sequence
(BLAST)
001: MASKSIAVFL LLALIVSSAI AQAPGASPTG SPLPATSPVS QPPRTAAPTP SRATTPPPSV TPTAAPTSPP AGSPTSTVAS PPAPPISLTP DGAPDANAPA
101: GSTPNDAAAL SAGSFLGFLF VAALLV
Best Arabidopsis Sequence Match ( AT4G09030.1 )
(BLAST)
001: MASKSVVVLL FLALIASSAI AQAPGPAPTR SPLPSPAQPP RTAAPTPSIT PTPTPTPSAT PTAAPVSPPA GSPLPSSASP PAPPTSLTPD GAPVAGPTGS
101: TPVDNNNAAT LAAGSLAGFV FVASLLL
Arabidopsis Description
AGP10Classical arabinogalactan protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0S4]
SUBAcon: [extracellular,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.