Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- golgi 5
- endoplasmic reticulum 5
- plastid 2
- plasma membrane 4
- vacuole 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G09030.1 | Thale cress | extracellular, plastid | 55.64 | 58.27 |
| Bra000670.1-P | Field mustard | endoplasmic reticulum, vacuole | 53.38 | 56.35 |
Protein Annotations
| MapMan:21.4.1.1.1 | EntrezGene:840412 | ProteinID:AAG51456.1 | ProteinID:AEE31770.1 | EMBL:AF082302 | Symbol:AGP5 |
| EMBL:AK117995 | ArrayExpress:AT1G35230 | EnsemblPlantsGene:AT1G35230 | RefSeq:AT1G35230 | TAIR:AT1G35230 | RefSeq:AT1G35230-TAIR-G |
| EnsemblPlants:AT1G35230.1 | TAIR:AT1G35230.1 | EMBL:AY086648 | EMBL:BT004723 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0031225 | RefSeq:NP_564455.1 | PO:PO:0000013 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020100 |
| PO:PO:0025022 | PANTHER:PTHR36321 | UniProt:Q8LCE4 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000000C44B |
| SEG:seg | : | : | : | : | : |
Description
AGP5Classical arabinogalactan protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCE4]
Coordinates
chr1:+:12917070..12917829
Molecular Weight (calculated)
12597.9 Da
IEP (calculated)
9.690
GRAVY (calculated)
0.247
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKSVVVFL FLALVASSVV AQAPGPAPTI SPLPATPTPS QSPRATAPAP SPSANPPPSA PTTAPPVSQP PTESPPAPPT STSPSGAPGT NVPSGEAGPA
101: QSPLSGSPNA AAVSRVSLVG TFAGVAVIAA LLL
101: QSPLSGSPNA AAVSRVSLVG TFAGVAVIAA LLL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.