Subcellular Localization
min:
: max
Winner_takes_all: extracellular, plastid
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 4
- endoplasmic reticulum 4
- plastid 3
- plasma membrane 3
- vacuole 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038390.1-P | Field mustard | extracellular | 43.31 | 67.9 |
| AT1G35230.1 | Thale cress | extracellular | 58.27 | 55.64 |
Protein Annotations
| MapMan:21.4.1.1.1 | EntrezGene:826482 | EMBL:AC005359 | ProteinID:AEE82714.1 | EMBL:AF195891 | Symbol:AGP10 |
| EMBL:AK229123 | ArrayExpress:AT4G09030 | EnsemblPlantsGene:AT4G09030 | RefSeq:AT4G09030 | TAIR:AT4G09030 | RefSeq:AT4G09030-TAIR-G |
| EnsemblPlants:AT4G09030.1 | TAIR:AT4G09030.1 | ProteinID:CAB78027.1 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | GO:GO:0031225 | RefSeq:NP_192642.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR36321 | UniProt:Q9M0S4 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI000009CDC4 | SEG:seg | : | : | : |
Description
AGP10Classical arabinogalactan protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0S4]
Coordinates
chr4:+:5792137..5792966
Molecular Weight (calculated)
12071.4 Da
IEP (calculated)
9.690
GRAVY (calculated)
0.298
Length
127 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKSVVVLL FLALIASSAI AQAPGPAPTR SPLPSPAQPP RTAAPTPSIT PTPTPTPSAT PTAAPVSPPA GSPLPSSASP PAPPTSLTPD GAPVAGPTGS
101: TPVDNNNAAT LAAGSLAGFV FVASLLL
101: TPVDNNNAAT LAAGSLAGFV FVASLLL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.